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Generalization in Clinical Prediction Models: The Blessing and Curse of Measurement Indicator Variables

OBJECTIVE: Specific factors affecting generalizability of clinical prediction models are poorly understood. Our main objective was to investigate how measurement indicator variables affect external validity in clinical prediction models for predicting onset of vasopressor therapy. DESIGN: We fit log...

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Autores principales: Futoma, Joseph, Simons, Morgan, Doshi-Velez, Finale, Kamaleswaran, Rishikesan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8238368/
https://www.ncbi.nlm.nih.gov/pubmed/34235453
http://dx.doi.org/10.1097/CCE.0000000000000453
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author Futoma, Joseph
Simons, Morgan
Doshi-Velez, Finale
Kamaleswaran, Rishikesan
author_facet Futoma, Joseph
Simons, Morgan
Doshi-Velez, Finale
Kamaleswaran, Rishikesan
author_sort Futoma, Joseph
collection PubMed
description OBJECTIVE: Specific factors affecting generalizability of clinical prediction models are poorly understood. Our main objective was to investigate how measurement indicator variables affect external validity in clinical prediction models for predicting onset of vasopressor therapy. DESIGN: We fit logistic regressions on retrospective cohorts to predict vasopressor onset using two classes of variables: seemingly objective clinical variables (vital signs and laboratory measurements) and more subjective variables denoting recency of measurements. SETTING: Three cohorts from two tertiary-care academic hospitals in geographically distinct regions, spanning general inpatient and critical care settings. PATIENTS: Each cohort consisted of adult patients (age greater than or equal to 18 yr at time of hospitalization), with lengths of stay between 6 and 600 hours, and who did not receive vasopressors in the first 6 hours of hospitalization or ICU admission. Models were developed on each of the three derivation cohorts and validated internally on the derivation cohort and externally on the other two cohorts. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: The prevalence of vasopressors was 0.9% in the general inpatient cohort and 12.4% and 11.5% in the two critical care cohorts. Models utilizing both classes of variables performed the best in-sample, with C-statistics for predicting vasopressor onset in 4 hours of 0.862 (95% CI, 0.844–0.879), 0.822 (95% CI, 0.793–0.852), and 0.889 (95% CI, 0.880–0.898). Models solely using the subjective variables denoting measurement recency had poor external validity. However, these practice-driven variables helped adjust for differences between the two hospitals and led to more generalizable models using clinical variables. CONCLUSIONS: We developed and externally validated models for predicting the onset of vasopressors. We found that practice-specific features denoting measurement recency improved local performance and also led to more generalizable models if they are adjusted for during model development but discarded at validation. The role of practice-specific features such as measurement indicators in clinical prediction modeling should be carefully considered if the goal is to develop generalizable models.
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spelling pubmed-82383682021-07-06 Generalization in Clinical Prediction Models: The Blessing and Curse of Measurement Indicator Variables Futoma, Joseph Simons, Morgan Doshi-Velez, Finale Kamaleswaran, Rishikesan Crit Care Explor Predictive Modeling Report OBJECTIVE: Specific factors affecting generalizability of clinical prediction models are poorly understood. Our main objective was to investigate how measurement indicator variables affect external validity in clinical prediction models for predicting onset of vasopressor therapy. DESIGN: We fit logistic regressions on retrospective cohorts to predict vasopressor onset using two classes of variables: seemingly objective clinical variables (vital signs and laboratory measurements) and more subjective variables denoting recency of measurements. SETTING: Three cohorts from two tertiary-care academic hospitals in geographically distinct regions, spanning general inpatient and critical care settings. PATIENTS: Each cohort consisted of adult patients (age greater than or equal to 18 yr at time of hospitalization), with lengths of stay between 6 and 600 hours, and who did not receive vasopressors in the first 6 hours of hospitalization or ICU admission. Models were developed on each of the three derivation cohorts and validated internally on the derivation cohort and externally on the other two cohorts. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: The prevalence of vasopressors was 0.9% in the general inpatient cohort and 12.4% and 11.5% in the two critical care cohorts. Models utilizing both classes of variables performed the best in-sample, with C-statistics for predicting vasopressor onset in 4 hours of 0.862 (95% CI, 0.844–0.879), 0.822 (95% CI, 0.793–0.852), and 0.889 (95% CI, 0.880–0.898). Models solely using the subjective variables denoting measurement recency had poor external validity. However, these practice-driven variables helped adjust for differences between the two hospitals and led to more generalizable models using clinical variables. CONCLUSIONS: We developed and externally validated models for predicting the onset of vasopressors. We found that practice-specific features denoting measurement recency improved local performance and also led to more generalizable models if they are adjusted for during model development but discarded at validation. The role of practice-specific features such as measurement indicators in clinical prediction modeling should be carefully considered if the goal is to develop generalizable models. Lippincott Williams & Wilkins 2021-06-25 /pmc/articles/PMC8238368/ /pubmed/34235453 http://dx.doi.org/10.1097/CCE.0000000000000453 Text en Copyright © 2021 The Authors. Published by Wolters Kluwer Health, Inc. on behalf of the Society of Critical Care Medicine. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) , where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal.
spellingShingle Predictive Modeling Report
Futoma, Joseph
Simons, Morgan
Doshi-Velez, Finale
Kamaleswaran, Rishikesan
Generalization in Clinical Prediction Models: The Blessing and Curse of Measurement Indicator Variables
title Generalization in Clinical Prediction Models: The Blessing and Curse of Measurement Indicator Variables
title_full Generalization in Clinical Prediction Models: The Blessing and Curse of Measurement Indicator Variables
title_fullStr Generalization in Clinical Prediction Models: The Blessing and Curse of Measurement Indicator Variables
title_full_unstemmed Generalization in Clinical Prediction Models: The Blessing and Curse of Measurement Indicator Variables
title_short Generalization in Clinical Prediction Models: The Blessing and Curse of Measurement Indicator Variables
title_sort generalization in clinical prediction models: the blessing and curse of measurement indicator variables
topic Predictive Modeling Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8238368/
https://www.ncbi.nlm.nih.gov/pubmed/34235453
http://dx.doi.org/10.1097/CCE.0000000000000453
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