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Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method
Macular edema is considered as a major cause of visual loss and blindness in patients with ocular fundus diseases. Optical coherence tomography (OCT) is a non-invasive imaging technique, which has been widely applied for diagnosing macular edema due to its non-invasive and high resolution properties...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8238965/ https://www.ncbi.nlm.nih.gov/pubmed/34183684 http://dx.doi.org/10.1038/s41598-021-92458-8 |
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author | Wang, Zhenhua Zhong, Yuanfu Yao, Mudi Ma, Yan Zhang, Wenping Li, Chaopeng Tao, Zhifu Jiang, Qin Yan, Biao |
author_facet | Wang, Zhenhua Zhong, Yuanfu Yao, Mudi Ma, Yan Zhang, Wenping Li, Chaopeng Tao, Zhifu Jiang, Qin Yan, Biao |
author_sort | Wang, Zhenhua |
collection | PubMed |
description | Macular edema is considered as a major cause of visual loss and blindness in patients with ocular fundus diseases. Optical coherence tomography (OCT) is a non-invasive imaging technique, which has been widely applied for diagnosing macular edema due to its non-invasive and high resolution properties. However, the practical applications remain challenges due to the distorted retinal morphology and blurred boundaries near macular edema. Herein, we developed a novel deep learning model for the segmentation of macular edema in OCT images based on DeepLab framework (OCT-DeepLab). In this model, we used atrous spatial pyramid pooling (ASPP) to detect macular edema at multiple features and used the fully connected conditional random field (CRF) to refine the boundary of macular edema. OCT-DeepLab model was compared against the traditional hand-crafted methods (C-V and SBG) and the end-to-end methods (FCN, PSPnet, and U-net) to estimate the segmentation performance. OCT-DeepLab showed great advantage over the hand-crafted methods (C-V and SBG) and end-to-end methods (FCN, PSPnet, and U-net) as shown by higher precision, sensitivity, specificity, and F1-score. The segmentation performance of OCT-DeepLab was comparable to that of manual label, with an average area under the curve (AUC) of 0.963, which was superior to other end-to-end methods (FCN, PSPnet, and U-net). Collectively, OCT-DeepLab model is suitable for the segmentation of macular edema and assist ophthalmologists in the management of ocular disease. |
format | Online Article Text |
id | pubmed-8238965 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82389652021-07-06 Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method Wang, Zhenhua Zhong, Yuanfu Yao, Mudi Ma, Yan Zhang, Wenping Li, Chaopeng Tao, Zhifu Jiang, Qin Yan, Biao Sci Rep Article Macular edema is considered as a major cause of visual loss and blindness in patients with ocular fundus diseases. Optical coherence tomography (OCT) is a non-invasive imaging technique, which has been widely applied for diagnosing macular edema due to its non-invasive and high resolution properties. However, the practical applications remain challenges due to the distorted retinal morphology and blurred boundaries near macular edema. Herein, we developed a novel deep learning model for the segmentation of macular edema in OCT images based on DeepLab framework (OCT-DeepLab). In this model, we used atrous spatial pyramid pooling (ASPP) to detect macular edema at multiple features and used the fully connected conditional random field (CRF) to refine the boundary of macular edema. OCT-DeepLab model was compared against the traditional hand-crafted methods (C-V and SBG) and the end-to-end methods (FCN, PSPnet, and U-net) to estimate the segmentation performance. OCT-DeepLab showed great advantage over the hand-crafted methods (C-V and SBG) and end-to-end methods (FCN, PSPnet, and U-net) as shown by higher precision, sensitivity, specificity, and F1-score. The segmentation performance of OCT-DeepLab was comparable to that of manual label, with an average area under the curve (AUC) of 0.963, which was superior to other end-to-end methods (FCN, PSPnet, and U-net). Collectively, OCT-DeepLab model is suitable for the segmentation of macular edema and assist ophthalmologists in the management of ocular disease. Nature Publishing Group UK 2021-06-28 /pmc/articles/PMC8238965/ /pubmed/34183684 http://dx.doi.org/10.1038/s41598-021-92458-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Wang, Zhenhua Zhong, Yuanfu Yao, Mudi Ma, Yan Zhang, Wenping Li, Chaopeng Tao, Zhifu Jiang, Qin Yan, Biao Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method |
title | Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method |
title_full | Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method |
title_fullStr | Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method |
title_full_unstemmed | Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method |
title_short | Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method |
title_sort | automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8238965/ https://www.ncbi.nlm.nih.gov/pubmed/34183684 http://dx.doi.org/10.1038/s41598-021-92458-8 |
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