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Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method

Macular edema is considered as a major cause of visual loss and blindness in patients with ocular fundus diseases. Optical coherence tomography (OCT) is a non-invasive imaging technique, which has been widely applied for diagnosing macular edema due to its non-invasive and high resolution properties...

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Autores principales: Wang, Zhenhua, Zhong, Yuanfu, Yao, Mudi, Ma, Yan, Zhang, Wenping, Li, Chaopeng, Tao, Zhifu, Jiang, Qin, Yan, Biao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8238965/
https://www.ncbi.nlm.nih.gov/pubmed/34183684
http://dx.doi.org/10.1038/s41598-021-92458-8
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author Wang, Zhenhua
Zhong, Yuanfu
Yao, Mudi
Ma, Yan
Zhang, Wenping
Li, Chaopeng
Tao, Zhifu
Jiang, Qin
Yan, Biao
author_facet Wang, Zhenhua
Zhong, Yuanfu
Yao, Mudi
Ma, Yan
Zhang, Wenping
Li, Chaopeng
Tao, Zhifu
Jiang, Qin
Yan, Biao
author_sort Wang, Zhenhua
collection PubMed
description Macular edema is considered as a major cause of visual loss and blindness in patients with ocular fundus diseases. Optical coherence tomography (OCT) is a non-invasive imaging technique, which has been widely applied for diagnosing macular edema due to its non-invasive and high resolution properties. However, the practical applications remain challenges due to the distorted retinal morphology and blurred boundaries near macular edema. Herein, we developed a novel deep learning model for the segmentation of macular edema in OCT images based on DeepLab framework (OCT-DeepLab). In this model, we used atrous spatial pyramid pooling (ASPP) to detect macular edema at multiple features and used the fully connected conditional random field (CRF) to refine the boundary of macular edema. OCT-DeepLab model was compared against the traditional hand-crafted methods (C-V and SBG) and the end-to-end methods (FCN, PSPnet, and U-net) to estimate the segmentation performance. OCT-DeepLab showed great advantage over the hand-crafted methods (C-V and SBG) and end-to-end methods (FCN, PSPnet, and U-net) as shown by higher precision, sensitivity, specificity, and F1-score. The segmentation performance of OCT-DeepLab was comparable to that of manual label, with an average area under the curve (AUC) of 0.963, which was superior to other end-to-end methods (FCN, PSPnet, and U-net). Collectively, OCT-DeepLab model is suitable for the segmentation of macular edema and assist ophthalmologists in the management of ocular disease.
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spelling pubmed-82389652021-07-06 Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method Wang, Zhenhua Zhong, Yuanfu Yao, Mudi Ma, Yan Zhang, Wenping Li, Chaopeng Tao, Zhifu Jiang, Qin Yan, Biao Sci Rep Article Macular edema is considered as a major cause of visual loss and blindness in patients with ocular fundus diseases. Optical coherence tomography (OCT) is a non-invasive imaging technique, which has been widely applied for diagnosing macular edema due to its non-invasive and high resolution properties. However, the practical applications remain challenges due to the distorted retinal morphology and blurred boundaries near macular edema. Herein, we developed a novel deep learning model for the segmentation of macular edema in OCT images based on DeepLab framework (OCT-DeepLab). In this model, we used atrous spatial pyramid pooling (ASPP) to detect macular edema at multiple features and used the fully connected conditional random field (CRF) to refine the boundary of macular edema. OCT-DeepLab model was compared against the traditional hand-crafted methods (C-V and SBG) and the end-to-end methods (FCN, PSPnet, and U-net) to estimate the segmentation performance. OCT-DeepLab showed great advantage over the hand-crafted methods (C-V and SBG) and end-to-end methods (FCN, PSPnet, and U-net) as shown by higher precision, sensitivity, specificity, and F1-score. The segmentation performance of OCT-DeepLab was comparable to that of manual label, with an average area under the curve (AUC) of 0.963, which was superior to other end-to-end methods (FCN, PSPnet, and U-net). Collectively, OCT-DeepLab model is suitable for the segmentation of macular edema and assist ophthalmologists in the management of ocular disease. Nature Publishing Group UK 2021-06-28 /pmc/articles/PMC8238965/ /pubmed/34183684 http://dx.doi.org/10.1038/s41598-021-92458-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wang, Zhenhua
Zhong, Yuanfu
Yao, Mudi
Ma, Yan
Zhang, Wenping
Li, Chaopeng
Tao, Zhifu
Jiang, Qin
Yan, Biao
Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method
title Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method
title_full Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method
title_fullStr Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method
title_full_unstemmed Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method
title_short Automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method
title_sort automated segmentation of macular edema for the diagnosis of ocular disease using deep learning method
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8238965/
https://www.ncbi.nlm.nih.gov/pubmed/34183684
http://dx.doi.org/10.1038/s41598-021-92458-8
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