Cargando…

Identification of an independent immune-genes prognostic index for renal cell carcinoma

BACKGROUND: Considerable evidence has indicated an association between the immune microenvironment and clinical outcome in ccRCC. The purpose of this study is to extensively figure out the influence of immune-related genes of tumors on the prognosis of patients with ccRCC. METHODS: Files containing...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Guangyao, Wei, Xiyi, Su, Shifeng, Wang, Shangqian, Wang, Wei, Wang, Yichun, Meng, Xianghu, Xia, Jiadong, Song, Ninghong, Qin, Chao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8240194/
https://www.ncbi.nlm.nih.gov/pubmed/34187413
http://dx.doi.org/10.1186/s12885-021-08367-6
_version_ 1783715164791504896
author Li, Guangyao
Wei, Xiyi
Su, Shifeng
Wang, Shangqian
Wang, Wei
Wang, Yichun
Meng, Xianghu
Xia, Jiadong
Song, Ninghong
Qin, Chao
author_facet Li, Guangyao
Wei, Xiyi
Su, Shifeng
Wang, Shangqian
Wang, Wei
Wang, Yichun
Meng, Xianghu
Xia, Jiadong
Song, Ninghong
Qin, Chao
author_sort Li, Guangyao
collection PubMed
description BACKGROUND: Considerable evidence has indicated an association between the immune microenvironment and clinical outcome in ccRCC. The purpose of this study is to extensively figure out the influence of immune-related genes of tumors on the prognosis of patients with ccRCC. METHODS: Files containing 2498 immune-related genes were obtained from the Immunology Database and Analysis Portal (ImmPort), and the transcriptome data and clinical information relevant to patients with ccRCC were identified and downloaded from the TCGA data-base. Univariate and multivariate Cox regression analyses were used to screen out prognostic immune genes. The immune risk score model was established in light of the regression coefficient between survival and hub immune-related genes. We eventually set up a nomogram for the prediction of the overall survival for ccRCC. Kaplan-Meier (K-M) and ROC curve was used in evaluating the value of the predictive risk model. A P value of < 0.05 indicated statistically significant differences throughout data analysis. RESULTS: Via differential analysis, we found that 556 immune-related genes were expressed differentially between tumor and normal tissues (p < 0. 05). The analysis of univariate Cox regression exhibited that there was a statistical correlation between 43 immune genes and survival risk in patients with ccRCC (p < 0.05). Through Lasso-Cox regression analysis, we established an immune genetic risk scoring model based on 18 immune-related genes. The high-risk group showed a bad prognosis in K-M analysis. (p < 0.001). ROC curve showed that it was reliable of the immune risk score model to predict survival risk (5 year over survival, AUC = 0.802). The model indicated satisfactory AUC and survival correlation in the validation data set (5 year OS, Area Under Curve = 0.705, p < 0.05). From Multivariate regression analysis, the immune-risk score model plays an isolated role in the prediction of the prognosis of ccRCC. Under multivariate-Cox regression analysis, we set up a nomogram for comprehensive prediction of ccRCC patients’ survival rate. At last, it was identified that 18 immune-related genes and risk scores were not only tremendously related to clinical prognosis but also contained in a variety of carcinogenic pathways. CONCLUSION: In general, tumor immune-related genes play essential roles in ccRCC development and progression. Our research established an unequal 18-immune gene risk index to predict the prognosis of ccRCC visually. This index was found to be an independent predictive factor for ccRCC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-021-08367-6.
format Online
Article
Text
id pubmed-8240194
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-82401942021-06-29 Identification of an independent immune-genes prognostic index for renal cell carcinoma Li, Guangyao Wei, Xiyi Su, Shifeng Wang, Shangqian Wang, Wei Wang, Yichun Meng, Xianghu Xia, Jiadong Song, Ninghong Qin, Chao BMC Cancer Research Article BACKGROUND: Considerable evidence has indicated an association between the immune microenvironment and clinical outcome in ccRCC. The purpose of this study is to extensively figure out the influence of immune-related genes of tumors on the prognosis of patients with ccRCC. METHODS: Files containing 2498 immune-related genes were obtained from the Immunology Database and Analysis Portal (ImmPort), and the transcriptome data and clinical information relevant to patients with ccRCC were identified and downloaded from the TCGA data-base. Univariate and multivariate Cox regression analyses were used to screen out prognostic immune genes. The immune risk score model was established in light of the regression coefficient between survival and hub immune-related genes. We eventually set up a nomogram for the prediction of the overall survival for ccRCC. Kaplan-Meier (K-M) and ROC curve was used in evaluating the value of the predictive risk model. A P value of < 0.05 indicated statistically significant differences throughout data analysis. RESULTS: Via differential analysis, we found that 556 immune-related genes were expressed differentially between tumor and normal tissues (p < 0. 05). The analysis of univariate Cox regression exhibited that there was a statistical correlation between 43 immune genes and survival risk in patients with ccRCC (p < 0.05). Through Lasso-Cox regression analysis, we established an immune genetic risk scoring model based on 18 immune-related genes. The high-risk group showed a bad prognosis in K-M analysis. (p < 0.001). ROC curve showed that it was reliable of the immune risk score model to predict survival risk (5 year over survival, AUC = 0.802). The model indicated satisfactory AUC and survival correlation in the validation data set (5 year OS, Area Under Curve = 0.705, p < 0.05). From Multivariate regression analysis, the immune-risk score model plays an isolated role in the prediction of the prognosis of ccRCC. Under multivariate-Cox regression analysis, we set up a nomogram for comprehensive prediction of ccRCC patients’ survival rate. At last, it was identified that 18 immune-related genes and risk scores were not only tremendously related to clinical prognosis but also contained in a variety of carcinogenic pathways. CONCLUSION: In general, tumor immune-related genes play essential roles in ccRCC development and progression. Our research established an unequal 18-immune gene risk index to predict the prognosis of ccRCC visually. This index was found to be an independent predictive factor for ccRCC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-021-08367-6. BioMed Central 2021-06-29 /pmc/articles/PMC8240194/ /pubmed/34187413 http://dx.doi.org/10.1186/s12885-021-08367-6 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Li, Guangyao
Wei, Xiyi
Su, Shifeng
Wang, Shangqian
Wang, Wei
Wang, Yichun
Meng, Xianghu
Xia, Jiadong
Song, Ninghong
Qin, Chao
Identification of an independent immune-genes prognostic index for renal cell carcinoma
title Identification of an independent immune-genes prognostic index for renal cell carcinoma
title_full Identification of an independent immune-genes prognostic index for renal cell carcinoma
title_fullStr Identification of an independent immune-genes prognostic index for renal cell carcinoma
title_full_unstemmed Identification of an independent immune-genes prognostic index for renal cell carcinoma
title_short Identification of an independent immune-genes prognostic index for renal cell carcinoma
title_sort identification of an independent immune-genes prognostic index for renal cell carcinoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8240194/
https://www.ncbi.nlm.nih.gov/pubmed/34187413
http://dx.doi.org/10.1186/s12885-021-08367-6
work_keys_str_mv AT liguangyao identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma
AT weixiyi identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma
AT sushifeng identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma
AT wangshangqian identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma
AT wangwei identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma
AT wangyichun identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma
AT mengxianghu identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma
AT xiajiadong identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma
AT songninghong identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma
AT qinchao identificationofanindependentimmunegenesprognosticindexforrenalcellcarcinoma