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Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches

Effectively designing and evaluating public health responses to the ongoing COVID-19 pandemic requires accurate estimation of the prevalence of COVID-19 across the United States (US). Equipment shortages and varying testing capabilities have however hindered the usefulness of the official reported p...

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Autores principales: Lu, Fred S., Nguyen, Andre T., Link, Nicholas B., Molina, Mathieu, Davis, Jessica T., Chinazzi, Matteo, Xiong, Xinyue, Vespignani, Alessandro, Lipsitch, Marc, Santillana, Mauricio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8241061/
https://www.ncbi.nlm.nih.gov/pubmed/34138845
http://dx.doi.org/10.1371/journal.pcbi.1008994
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author Lu, Fred S.
Nguyen, Andre T.
Link, Nicholas B.
Molina, Mathieu
Davis, Jessica T.
Chinazzi, Matteo
Xiong, Xinyue
Vespignani, Alessandro
Lipsitch, Marc
Santillana, Mauricio
author_facet Lu, Fred S.
Nguyen, Andre T.
Link, Nicholas B.
Molina, Mathieu
Davis, Jessica T.
Chinazzi, Matteo
Xiong, Xinyue
Vespignani, Alessandro
Lipsitch, Marc
Santillana, Mauricio
author_sort Lu, Fred S.
collection PubMed
description Effectively designing and evaluating public health responses to the ongoing COVID-19 pandemic requires accurate estimation of the prevalence of COVID-19 across the United States (US). Equipment shortages and varying testing capabilities have however hindered the usefulness of the official reported positive COVID-19 case counts. We introduce four complementary approaches to estimate the cumulative incidence of symptomatic COVID-19 in each state in the US as well as Puerto Rico and the District of Columbia, using a combination of excess influenza-like illness reports, COVID-19 test statistics, COVID-19 mortality reports, and a spatially structured epidemic model. Instead of relying on the estimate from a single data source or method that may be biased, we provide multiple estimates, each relying on different assumptions and data sources. Across our four approaches emerges the consistent conclusion that on April 4, 2020, the estimated case count was 5 to 50 times higher than the official positive test counts across the different states. Nationally, our estimates of COVID-19 symptomatic cases as of April 4 have a likely range of 2.3 to 4.8 million, with possibly as many as 7.6 million cases, up to 25 times greater than the cumulative confirmed cases of about 311,000. Extending our methods to May 16, 2020, we estimate that cumulative symptomatic incidence ranges from 4.9 to 10.1 million, as opposed to 1.5 million positive test counts. The proposed combination of approaches may prove useful in assessing the burden of COVID-19 during resurgences in the US and other countries with comparable surveillance systems.
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spelling pubmed-82410612021-07-09 Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches Lu, Fred S. Nguyen, Andre T. Link, Nicholas B. Molina, Mathieu Davis, Jessica T. Chinazzi, Matteo Xiong, Xinyue Vespignani, Alessandro Lipsitch, Marc Santillana, Mauricio PLoS Comput Biol Research Article Effectively designing and evaluating public health responses to the ongoing COVID-19 pandemic requires accurate estimation of the prevalence of COVID-19 across the United States (US). Equipment shortages and varying testing capabilities have however hindered the usefulness of the official reported positive COVID-19 case counts. We introduce four complementary approaches to estimate the cumulative incidence of symptomatic COVID-19 in each state in the US as well as Puerto Rico and the District of Columbia, using a combination of excess influenza-like illness reports, COVID-19 test statistics, COVID-19 mortality reports, and a spatially structured epidemic model. Instead of relying on the estimate from a single data source or method that may be biased, we provide multiple estimates, each relying on different assumptions and data sources. Across our four approaches emerges the consistent conclusion that on April 4, 2020, the estimated case count was 5 to 50 times higher than the official positive test counts across the different states. Nationally, our estimates of COVID-19 symptomatic cases as of April 4 have a likely range of 2.3 to 4.8 million, with possibly as many as 7.6 million cases, up to 25 times greater than the cumulative confirmed cases of about 311,000. Extending our methods to May 16, 2020, we estimate that cumulative symptomatic incidence ranges from 4.9 to 10.1 million, as opposed to 1.5 million positive test counts. The proposed combination of approaches may prove useful in assessing the burden of COVID-19 during resurgences in the US and other countries with comparable surveillance systems. Public Library of Science 2021-06-17 /pmc/articles/PMC8241061/ /pubmed/34138845 http://dx.doi.org/10.1371/journal.pcbi.1008994 Text en https://creativecommons.org/publicdomain/zero/1.0/This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Lu, Fred S.
Nguyen, Andre T.
Link, Nicholas B.
Molina, Mathieu
Davis, Jessica T.
Chinazzi, Matteo
Xiong, Xinyue
Vespignani, Alessandro
Lipsitch, Marc
Santillana, Mauricio
Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches
title Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches
title_full Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches
title_fullStr Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches
title_full_unstemmed Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches
title_short Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches
title_sort estimating the cumulative incidence of covid-19 in the united states using influenza surveillance, virologic testing, and mortality data: four complementary approaches
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8241061/
https://www.ncbi.nlm.nih.gov/pubmed/34138845
http://dx.doi.org/10.1371/journal.pcbi.1008994
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