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3DBionotes COVID-19 edition

SUMMARY: The web platform 3DBionotes-WS integrates multiple web services and an interactive web viewer to provide a unified environment in which biological annotations can be analyzed in their structural context. Since the COVID-19 outbreak, new structural data from many viral proteins have been pro...

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Detalles Bibliográficos
Autores principales: Macias, Jose Ramon, Sanchez-Garcia, Ruben, Conesa, Pablo, Ramirez-Aportela, Erney, Martinez Gonzalez, Marta, Wert-Carvajal, Carlos, Parra-Perez, Alberto M, Segura Mora, Joan, Horrell, Sam, Thorn, Andrea, Sorzano, Carlos O S, Carazo, Jose Maria
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8241415/
https://www.ncbi.nlm.nih.gov/pubmed/34014278
http://dx.doi.org/10.1093/bioinformatics/btab397
Descripción
Sumario:SUMMARY: The web platform 3DBionotes-WS integrates multiple web services and an interactive web viewer to provide a unified environment in which biological annotations can be analyzed in their structural context. Since the COVID-19 outbreak, new structural data from many viral proteins have been provided at a very fast pace. This effort includes many cryogenic electron microscopy (cryo-EM) studies, together with more traditional ones (X-rays, NMR), using several modeling approaches and complemented with structural predictions. At the same time, a plethora of new genomics and interactomics information (including fragment screening and structure-based virtual screening efforts) have been made available from different servers. In this context, we have developed 3DBionotes-COVID-19 as an answer to: (i) the need to explore multiomics data in a unified context with a special focus on structural information and (ii) the drive to incorporate quality measurements, especially in the form of advanced validation metrics for cryo-EM. AVAILABILITY AND IMPLEMENTATION: https://3dbionotes.cnb.csic.es/ws/covid19. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.