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3DBionotes COVID-19 edition
SUMMARY: The web platform 3DBionotes-WS integrates multiple web services and an interactive web viewer to provide a unified environment in which biological annotations can be analyzed in their structural context. Since the COVID-19 outbreak, new structural data from many viral proteins have been pro...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8241415/ https://www.ncbi.nlm.nih.gov/pubmed/34014278 http://dx.doi.org/10.1093/bioinformatics/btab397 |
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author | Macias, Jose Ramon Sanchez-Garcia, Ruben Conesa, Pablo Ramirez-Aportela, Erney Martinez Gonzalez, Marta Wert-Carvajal, Carlos Parra-Perez, Alberto M Segura Mora, Joan Horrell, Sam Thorn, Andrea Sorzano, Carlos O S Carazo, Jose Maria |
author_facet | Macias, Jose Ramon Sanchez-Garcia, Ruben Conesa, Pablo Ramirez-Aportela, Erney Martinez Gonzalez, Marta Wert-Carvajal, Carlos Parra-Perez, Alberto M Segura Mora, Joan Horrell, Sam Thorn, Andrea Sorzano, Carlos O S Carazo, Jose Maria |
author_sort | Macias, Jose Ramon |
collection | PubMed |
description | SUMMARY: The web platform 3DBionotes-WS integrates multiple web services and an interactive web viewer to provide a unified environment in which biological annotations can be analyzed in their structural context. Since the COVID-19 outbreak, new structural data from many viral proteins have been provided at a very fast pace. This effort includes many cryogenic electron microscopy (cryo-EM) studies, together with more traditional ones (X-rays, NMR), using several modeling approaches and complemented with structural predictions. At the same time, a plethora of new genomics and interactomics information (including fragment screening and structure-based virtual screening efforts) have been made available from different servers. In this context, we have developed 3DBionotes-COVID-19 as an answer to: (i) the need to explore multiomics data in a unified context with a special focus on structural information and (ii) the drive to incorporate quality measurements, especially in the form of advanced validation metrics for cryo-EM. AVAILABILITY AND IMPLEMENTATION: https://3dbionotes.cnb.csic.es/ws/covid19. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-8241415 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-82414152021-06-30 3DBionotes COVID-19 edition Macias, Jose Ramon Sanchez-Garcia, Ruben Conesa, Pablo Ramirez-Aportela, Erney Martinez Gonzalez, Marta Wert-Carvajal, Carlos Parra-Perez, Alberto M Segura Mora, Joan Horrell, Sam Thorn, Andrea Sorzano, Carlos O S Carazo, Jose Maria Bioinformatics Applications Notes SUMMARY: The web platform 3DBionotes-WS integrates multiple web services and an interactive web viewer to provide a unified environment in which biological annotations can be analyzed in their structural context. Since the COVID-19 outbreak, new structural data from many viral proteins have been provided at a very fast pace. This effort includes many cryogenic electron microscopy (cryo-EM) studies, together with more traditional ones (X-rays, NMR), using several modeling approaches and complemented with structural predictions. At the same time, a plethora of new genomics and interactomics information (including fragment screening and structure-based virtual screening efforts) have been made available from different servers. In this context, we have developed 3DBionotes-COVID-19 as an answer to: (i) the need to explore multiomics data in a unified context with a special focus on structural information and (ii) the drive to incorporate quality measurements, especially in the form of advanced validation metrics for cryo-EM. AVAILABILITY AND IMPLEMENTATION: https://3dbionotes.cnb.csic.es/ws/covid19. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2021-05-20 /pmc/articles/PMC8241415/ /pubmed/34014278 http://dx.doi.org/10.1093/bioinformatics/btab397 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Applications Notes Macias, Jose Ramon Sanchez-Garcia, Ruben Conesa, Pablo Ramirez-Aportela, Erney Martinez Gonzalez, Marta Wert-Carvajal, Carlos Parra-Perez, Alberto M Segura Mora, Joan Horrell, Sam Thorn, Andrea Sorzano, Carlos O S Carazo, Jose Maria 3DBionotes COVID-19 edition |
title | 3DBionotes COVID-19 edition |
title_full | 3DBionotes COVID-19 edition |
title_fullStr | 3DBionotes COVID-19 edition |
title_full_unstemmed | 3DBionotes COVID-19 edition |
title_short | 3DBionotes COVID-19 edition |
title_sort | 3dbionotes covid-19 edition |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8241415/ https://www.ncbi.nlm.nih.gov/pubmed/34014278 http://dx.doi.org/10.1093/bioinformatics/btab397 |
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