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Controlling biomolecular condensates via chemical reactions

Biomolecular condensates are small droplets forming spontaneously in biological cells through phase separation. They play a role in many cellular processes, but it is unclear how cells control them. Cellular regulation often relies on post-translational modifications of proteins. For biomolecular co...

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Detalles Bibliográficos
Autores principales: Kirschbaum, Jan, Zwicker, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8241490/
https://www.ncbi.nlm.nih.gov/pubmed/34186016
http://dx.doi.org/10.1098/rsif.2021.0255
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author Kirschbaum, Jan
Zwicker, David
author_facet Kirschbaum, Jan
Zwicker, David
author_sort Kirschbaum, Jan
collection PubMed
description Biomolecular condensates are small droplets forming spontaneously in biological cells through phase separation. They play a role in many cellular processes, but it is unclear how cells control them. Cellular regulation often relies on post-translational modifications of proteins. For biomolecular condensates, such chemical modifications could alter the molecular interaction of key condensate components. Here, we test this idea using a theoretical model based on non-equilibrium thermodynamics. In particular, we describe the chemical reactions using transition-state theory, which accounts for the non-ideality of phase separation. We identify that fast control, as in cell signalling, is only possible when external energy input drives the reaction out of equilibrium. If this reaction differs inside and outside the droplet, it is even possible to control droplet sizes. Such an imbalance in the reaction could be created by enzymes localizing to the droplet. Since this situation is typical inside cells, we speculate that our proposed mechanism is used to stabilize multiple droplets with independently controlled size and count. Our model provides a novel and thermodynamically consistent framework for describing droplets subject to non-equilibrium chemical reactions.
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spelling pubmed-82414902021-06-30 Controlling biomolecular condensates via chemical reactions Kirschbaum, Jan Zwicker, David J R Soc Interface Life Sciences–Physics interface Biomolecular condensates are small droplets forming spontaneously in biological cells through phase separation. They play a role in many cellular processes, but it is unclear how cells control them. Cellular regulation often relies on post-translational modifications of proteins. For biomolecular condensates, such chemical modifications could alter the molecular interaction of key condensate components. Here, we test this idea using a theoretical model based on non-equilibrium thermodynamics. In particular, we describe the chemical reactions using transition-state theory, which accounts for the non-ideality of phase separation. We identify that fast control, as in cell signalling, is only possible when external energy input drives the reaction out of equilibrium. If this reaction differs inside and outside the droplet, it is even possible to control droplet sizes. Such an imbalance in the reaction could be created by enzymes localizing to the droplet. Since this situation is typical inside cells, we speculate that our proposed mechanism is used to stabilize multiple droplets with independently controlled size and count. Our model provides a novel and thermodynamically consistent framework for describing droplets subject to non-equilibrium chemical reactions. The Royal Society 2021-06-30 /pmc/articles/PMC8241490/ /pubmed/34186016 http://dx.doi.org/10.1098/rsif.2021.0255 Text en © 2021 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Life Sciences–Physics interface
Kirschbaum, Jan
Zwicker, David
Controlling biomolecular condensates via chemical reactions
title Controlling biomolecular condensates via chemical reactions
title_full Controlling biomolecular condensates via chemical reactions
title_fullStr Controlling biomolecular condensates via chemical reactions
title_full_unstemmed Controlling biomolecular condensates via chemical reactions
title_short Controlling biomolecular condensates via chemical reactions
title_sort controlling biomolecular condensates via chemical reactions
topic Life Sciences–Physics interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8241490/
https://www.ncbi.nlm.nih.gov/pubmed/34186016
http://dx.doi.org/10.1098/rsif.2021.0255
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