The cp genome characterization of Adenium obesum: Gene content, repeat organization and phylogeny

Adenium obesum (Forssk.) Roem. & Schult. belonging to the family Apocynaceae, is remarkable for its horticultural and ornamental values, poisonous nature, and medicinal uses. In order to have understanding of cp genome characterization of highly valued medicinal plant, and the evolutionary and s...

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Autores principales: Alanazi, Khalid Mashay, Ali, Mohammad Ajmal, Kim, Soo-Yong, Rahman, M. Oliur, Farah, Mohammad Abul, Alhemaid, Fahad, Elangbam, Meena, Gurung, Arun Bahadur, Lee, Joongku
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
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Original Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8241589/
https://www.ncbi.nlm.nih.gov/pubmed/34220230
http://dx.doi.org/10.1016/j.sjbs.2021.03.048
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author Alanazi, Khalid Mashay
Ali, Mohammad Ajmal
Kim, Soo-Yong
Rahman, M. Oliur
Farah, Mohammad Abul
Alhemaid, Fahad
Elangbam, Meena
Gurung, Arun Bahadur
Lee, Joongku
author_facet Alanazi, Khalid Mashay
Ali, Mohammad Ajmal
Kim, Soo-Yong
Rahman, M. Oliur
Farah, Mohammad Abul
Alhemaid, Fahad
Elangbam, Meena
Gurung, Arun Bahadur
Lee, Joongku
author_sort Alanazi, Khalid Mashay
collection PubMed
description Adenium obesum (Forssk.) Roem. & Schult. belonging to the family Apocynaceae, is remarkable for its horticultural and ornamental values, poisonous nature, and medicinal uses. In order to have understanding of cp genome characterization of highly valued medicinal plant, and the evolutionary and systematic relationships, the complete plastome / chloroplast (cp) genome of A. obesum was sequenced. The assembled cp genome of A. obesum was found to be 154,437 bp, with an overall GC content of 38.1%. A total of 127 unique coding genes were annotated including 96 protein-coding genes, 28 tRNA genes, and 3 rRNA genes. The repeat structures were found to comprise of only mononucleotide repeats. The SSR loci are compososed of only A/T bases. The phylogenetic analysis of cp genomes revealed its proximity with Nerium oleander.
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spelling pubmed-82415892021-07-02 The cp genome characterization of Adenium obesum: Gene content, repeat organization and phylogeny Alanazi, Khalid Mashay Ali, Mohammad Ajmal Kim, Soo-Yong Rahman, M. Oliur Farah, Mohammad Abul Alhemaid, Fahad Elangbam, Meena Gurung, Arun Bahadur Lee, Joongku Saudi J Biol Sci Original Article Adenium obesum (Forssk.) Roem. & Schult. belonging to the family Apocynaceae, is remarkable for its horticultural and ornamental values, poisonous nature, and medicinal uses. In order to have understanding of cp genome characterization of highly valued medicinal plant, and the evolutionary and systematic relationships, the complete plastome / chloroplast (cp) genome of A. obesum was sequenced. The assembled cp genome of A. obesum was found to be 154,437 bp, with an overall GC content of 38.1%. A total of 127 unique coding genes were annotated including 96 protein-coding genes, 28 tRNA genes, and 3 rRNA genes. The repeat structures were found to comprise of only mononucleotide repeats. The SSR loci are compososed of only A/T bases. The phylogenetic analysis of cp genomes revealed its proximity with Nerium oleander. Elsevier 2021-07 2021-03-23 /pmc/articles/PMC8241589/ /pubmed/34220230 http://dx.doi.org/10.1016/j.sjbs.2021.03.048 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Alanazi, Khalid Mashay
Ali, Mohammad Ajmal
Kim, Soo-Yong
Rahman, M. Oliur
Farah, Mohammad Abul
Alhemaid, Fahad
Elangbam, Meena
Gurung, Arun Bahadur
Lee, Joongku
The cp genome characterization of Adenium obesum: Gene content, repeat organization and phylogeny
title The cp genome characterization of Adenium obesum: Gene content, repeat organization and phylogeny
title_full The cp genome characterization of Adenium obesum: Gene content, repeat organization and phylogeny
title_fullStr The cp genome characterization of Adenium obesum: Gene content, repeat organization and phylogeny
title_full_unstemmed The cp genome characterization of Adenium obesum: Gene content, repeat organization and phylogeny
title_short The cp genome characterization of Adenium obesum: Gene content, repeat organization and phylogeny
title_sort cp genome characterization of adenium obesum: gene content, repeat organization and phylogeny
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8241589/
https://www.ncbi.nlm.nih.gov/pubmed/34220230
http://dx.doi.org/10.1016/j.sjbs.2021.03.048
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