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Fast and accurate modeling of transient‐state, gradient‐spoiled sequences by recurrent neural networks

Fast and accurate modeling of MR signal responses are typically required for various quantitative MRI applications, such as MR fingerprinting. This work uses a new extended phase graph (EPG)‐Bloch model for accurate simulation of transient‐state, gradient‐spoiled MR sequences, and proposes a recurre...

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Autores principales: Liu, Hongyan, van der Heide, Oscar, van den Berg, Cornelis A. T., Sbrizzi, Alessandro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8244023/
https://www.ncbi.nlm.nih.gov/pubmed/33949718
http://dx.doi.org/10.1002/nbm.4527
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author Liu, Hongyan
van der Heide, Oscar
van den Berg, Cornelis A. T.
Sbrizzi, Alessandro
author_facet Liu, Hongyan
van der Heide, Oscar
van den Berg, Cornelis A. T.
Sbrizzi, Alessandro
author_sort Liu, Hongyan
collection PubMed
description Fast and accurate modeling of MR signal responses are typically required for various quantitative MRI applications, such as MR fingerprinting. This work uses a new extended phase graph (EPG)‐Bloch model for accurate simulation of transient‐state, gradient‐spoiled MR sequences, and proposes a recurrent neural network (RNN) as a fast surrogate of the EPG‐Bloch model for computing large‐scale MR signals and derivatives. The computational efficiency of the RNN model is demonstrated by comparisons with other existing models, showing one to three orders of acceleration compared with the latest GPU‐accelerated, open‐source EPG package. By using numerical and in vivo brain data, two used cases, namely, MRF dictionary generation and optimal experimental design, are also provided. Results show that the RNN surrogate model can be efficiently used for computing large‐scale dictionaries of transient‐state signals and derivatives within tens of seconds, resulting in several orders of magnitude acceleration with respect to state‐of‐the‐art implementations. The practical application of transient‐state quantitative techniques can therefore be substantially facilitated.
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spelling pubmed-82440232021-07-02 Fast and accurate modeling of transient‐state, gradient‐spoiled sequences by recurrent neural networks Liu, Hongyan van der Heide, Oscar van den Berg, Cornelis A. T. Sbrizzi, Alessandro NMR Biomed Research Articles Fast and accurate modeling of MR signal responses are typically required for various quantitative MRI applications, such as MR fingerprinting. This work uses a new extended phase graph (EPG)‐Bloch model for accurate simulation of transient‐state, gradient‐spoiled MR sequences, and proposes a recurrent neural network (RNN) as a fast surrogate of the EPG‐Bloch model for computing large‐scale MR signals and derivatives. The computational efficiency of the RNN model is demonstrated by comparisons with other existing models, showing one to three orders of acceleration compared with the latest GPU‐accelerated, open‐source EPG package. By using numerical and in vivo brain data, two used cases, namely, MRF dictionary generation and optimal experimental design, are also provided. Results show that the RNN surrogate model can be efficiently used for computing large‐scale dictionaries of transient‐state signals and derivatives within tens of seconds, resulting in several orders of magnitude acceleration with respect to state‐of‐the‐art implementations. The practical application of transient‐state quantitative techniques can therefore be substantially facilitated. John Wiley and Sons Inc. 2021-05-05 2021-07 /pmc/articles/PMC8244023/ /pubmed/33949718 http://dx.doi.org/10.1002/nbm.4527 Text en © 2021 The Authors. NMR in Biomedicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Liu, Hongyan
van der Heide, Oscar
van den Berg, Cornelis A. T.
Sbrizzi, Alessandro
Fast and accurate modeling of transient‐state, gradient‐spoiled sequences by recurrent neural networks
title Fast and accurate modeling of transient‐state, gradient‐spoiled sequences by recurrent neural networks
title_full Fast and accurate modeling of transient‐state, gradient‐spoiled sequences by recurrent neural networks
title_fullStr Fast and accurate modeling of transient‐state, gradient‐spoiled sequences by recurrent neural networks
title_full_unstemmed Fast and accurate modeling of transient‐state, gradient‐spoiled sequences by recurrent neural networks
title_short Fast and accurate modeling of transient‐state, gradient‐spoiled sequences by recurrent neural networks
title_sort fast and accurate modeling of transient‐state, gradient‐spoiled sequences by recurrent neural networks
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8244023/
https://www.ncbi.nlm.nih.gov/pubmed/33949718
http://dx.doi.org/10.1002/nbm.4527
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