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Enabling forward uncertainty quantification and sensitivity analysis in cardiac electrophysiology by reduced order modeling and machine learning

We present a new, computationally efficient framework to perform forward uncertainty quantification (UQ) in cardiac electrophysiology. We consider the monodomain model to describe the electrical activity in the cardiac tissue, coupled with the Aliev‐Panfilov model to characterize the ionic activity...

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Detalles Bibliográficos
Autores principales: Pagani, Stefano, Manzoni, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8244126/
https://www.ncbi.nlm.nih.gov/pubmed/33599106
http://dx.doi.org/10.1002/cnm.3450
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author Pagani, Stefano
Manzoni, Andrea
author_facet Pagani, Stefano
Manzoni, Andrea
author_sort Pagani, Stefano
collection PubMed
description We present a new, computationally efficient framework to perform forward uncertainty quantification (UQ) in cardiac electrophysiology. We consider the monodomain model to describe the electrical activity in the cardiac tissue, coupled with the Aliev‐Panfilov model to characterize the ionic activity through the cell membrane. We address a complete forward UQ pipeline, including both: (i) a variance‐based global sensitivity analysis for the selection of the most relevant input parameters, and (ii) a way to perform uncertainty propagation to investigate the impact of intra‐subject variability on outputs of interest depending on the cardiac potential. Both tasks exploit stochastic sampling techniques, thus implying overwhelming computational costs because of the huge amount of queries to the high‐fidelity, full‐order computational model obtained by approximating the coupled monodomain/Aliev‐Panfilov system through the finite element method. To mitigate this computational burden, we replace the full‐order model with computationally inexpensive projection‐based reduced‐order models (ROMs) aimed at reducing the state‐space dimensionality. Resulting approximation errors on the outputs of interest are finally taken into account through artificial neural network (ANN)‐based models, enhancing the accuracy of the whole UQ pipeline. Numerical results show that the proposed physics‐based ROMs outperform regression‐based emulators relying on ANNs built with the same amount of training data, in terms of both numerical accuracy and overall computational efficiency.
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spelling pubmed-82441262021-07-02 Enabling forward uncertainty quantification and sensitivity analysis in cardiac electrophysiology by reduced order modeling and machine learning Pagani, Stefano Manzoni, Andrea Int J Numer Method Biomed Eng Research Article ‐ Fundamental We present a new, computationally efficient framework to perform forward uncertainty quantification (UQ) in cardiac electrophysiology. We consider the monodomain model to describe the electrical activity in the cardiac tissue, coupled with the Aliev‐Panfilov model to characterize the ionic activity through the cell membrane. We address a complete forward UQ pipeline, including both: (i) a variance‐based global sensitivity analysis for the selection of the most relevant input parameters, and (ii) a way to perform uncertainty propagation to investigate the impact of intra‐subject variability on outputs of interest depending on the cardiac potential. Both tasks exploit stochastic sampling techniques, thus implying overwhelming computational costs because of the huge amount of queries to the high‐fidelity, full‐order computational model obtained by approximating the coupled monodomain/Aliev‐Panfilov system through the finite element method. To mitigate this computational burden, we replace the full‐order model with computationally inexpensive projection‐based reduced‐order models (ROMs) aimed at reducing the state‐space dimensionality. Resulting approximation errors on the outputs of interest are finally taken into account through artificial neural network (ANN)‐based models, enhancing the accuracy of the whole UQ pipeline. Numerical results show that the proposed physics‐based ROMs outperform regression‐based emulators relying on ANNs built with the same amount of training data, in terms of both numerical accuracy and overall computational efficiency. John Wiley & Sons, Inc. 2021-05-07 2021-06 /pmc/articles/PMC8244126/ /pubmed/33599106 http://dx.doi.org/10.1002/cnm.3450 Text en © 2021 The Authors. International Journal for Numerical Methods in Biomedical Engineering published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Article ‐ Fundamental
Pagani, Stefano
Manzoni, Andrea
Enabling forward uncertainty quantification and sensitivity analysis in cardiac electrophysiology by reduced order modeling and machine learning
title Enabling forward uncertainty quantification and sensitivity analysis in cardiac electrophysiology by reduced order modeling and machine learning
title_full Enabling forward uncertainty quantification and sensitivity analysis in cardiac electrophysiology by reduced order modeling and machine learning
title_fullStr Enabling forward uncertainty quantification and sensitivity analysis in cardiac electrophysiology by reduced order modeling and machine learning
title_full_unstemmed Enabling forward uncertainty quantification and sensitivity analysis in cardiac electrophysiology by reduced order modeling and machine learning
title_short Enabling forward uncertainty quantification and sensitivity analysis in cardiac electrophysiology by reduced order modeling and machine learning
title_sort enabling forward uncertainty quantification and sensitivity analysis in cardiac electrophysiology by reduced order modeling and machine learning
topic Research Article ‐ Fundamental
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8244126/
https://www.ncbi.nlm.nih.gov/pubmed/33599106
http://dx.doi.org/10.1002/cnm.3450
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