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Single-cell conventional pap smear image classification using pre-trained deep neural network architectures

BACKGROUND: Automating cytology-based cervical cancer screening could alleviate the shortage of skilled pathologists in developing countries. Up until now, computer vision experts have attempted numerous semi and fully automated approaches to address the need. Yet, these days, leveraging the astonis...

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Autores principales: Mohammed, Mohammed Aliy, Abdurahman, Fetulhak, Ayalew, Yodit Abebe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8244198/
https://www.ncbi.nlm.nih.gov/pubmed/34187589
http://dx.doi.org/10.1186/s42490-021-00056-6
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author Mohammed, Mohammed Aliy
Abdurahman, Fetulhak
Ayalew, Yodit Abebe
author_facet Mohammed, Mohammed Aliy
Abdurahman, Fetulhak
Ayalew, Yodit Abebe
author_sort Mohammed, Mohammed Aliy
collection PubMed
description BACKGROUND: Automating cytology-based cervical cancer screening could alleviate the shortage of skilled pathologists in developing countries. Up until now, computer vision experts have attempted numerous semi and fully automated approaches to address the need. Yet, these days, leveraging the astonishing accuracy and reproducibility of deep neural networks has become common among computer vision experts. In this regard, the purpose of this study is to classify single-cell Pap smear (cytology) images using pre-trained deep convolutional neural network (DCNN) image classifiers. We have fine-tuned the top ten pre-trained DCNN image classifiers and evaluated them using five class single-cell Pap smear images from SIPaKMeD dataset. The pre-trained DCNN image classifiers were selected from Keras Applications based on their top 1% accuracy. RESULTS: Our experimental result demonstrated that from the selected top-ten pre-trained DCNN image classifiers DenseNet169 outperformed with an average accuracy, precision, recall, and F1-score of 0.990, 0.974, 0.974, and 0.974, respectively. Moreover, it dashed the benchmark accuracy proposed by the creators of the dataset with 3.70%. CONCLUSIONS: Even though the size of DenseNet169 is small compared to the experimented pre-trained DCNN image classifiers, yet, it is not suitable for mobile or edge devices. Further experimentation with mobile or small-size DCNN image classifiers is required to extend the applicability of the models in real-world demands. In addition, since all experiments used the SIPaKMeD dataset, additional experiments will be needed using new datasets to enhance the generalizability of the models.
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spelling pubmed-82441982021-07-06 Single-cell conventional pap smear image classification using pre-trained deep neural network architectures Mohammed, Mohammed Aliy Abdurahman, Fetulhak Ayalew, Yodit Abebe BMC Biomed Eng Research BACKGROUND: Automating cytology-based cervical cancer screening could alleviate the shortage of skilled pathologists in developing countries. Up until now, computer vision experts have attempted numerous semi and fully automated approaches to address the need. Yet, these days, leveraging the astonishing accuracy and reproducibility of deep neural networks has become common among computer vision experts. In this regard, the purpose of this study is to classify single-cell Pap smear (cytology) images using pre-trained deep convolutional neural network (DCNN) image classifiers. We have fine-tuned the top ten pre-trained DCNN image classifiers and evaluated them using five class single-cell Pap smear images from SIPaKMeD dataset. The pre-trained DCNN image classifiers were selected from Keras Applications based on their top 1% accuracy. RESULTS: Our experimental result demonstrated that from the selected top-ten pre-trained DCNN image classifiers DenseNet169 outperformed with an average accuracy, precision, recall, and F1-score of 0.990, 0.974, 0.974, and 0.974, respectively. Moreover, it dashed the benchmark accuracy proposed by the creators of the dataset with 3.70%. CONCLUSIONS: Even though the size of DenseNet169 is small compared to the experimented pre-trained DCNN image classifiers, yet, it is not suitable for mobile or edge devices. Further experimentation with mobile or small-size DCNN image classifiers is required to extend the applicability of the models in real-world demands. In addition, since all experiments used the SIPaKMeD dataset, additional experiments will be needed using new datasets to enhance the generalizability of the models. BioMed Central 2021-06-29 /pmc/articles/PMC8244198/ /pubmed/34187589 http://dx.doi.org/10.1186/s42490-021-00056-6 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Mohammed, Mohammed Aliy
Abdurahman, Fetulhak
Ayalew, Yodit Abebe
Single-cell conventional pap smear image classification using pre-trained deep neural network architectures
title Single-cell conventional pap smear image classification using pre-trained deep neural network architectures
title_full Single-cell conventional pap smear image classification using pre-trained deep neural network architectures
title_fullStr Single-cell conventional pap smear image classification using pre-trained deep neural network architectures
title_full_unstemmed Single-cell conventional pap smear image classification using pre-trained deep neural network architectures
title_short Single-cell conventional pap smear image classification using pre-trained deep neural network architectures
title_sort single-cell conventional pap smear image classification using pre-trained deep neural network architectures
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8244198/
https://www.ncbi.nlm.nih.gov/pubmed/34187589
http://dx.doi.org/10.1186/s42490-021-00056-6
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