The complete chloroplast genome sequence of a hybrid blackberry (Rubus spp.) cultivar

Blackberry (Rubus spp.) is an important hybrid fruit crop popular in the US Pacific Northwest and the European region with complex origins. In this study, we report the complete chloroplast genome sequence of a hybrid blackberry cultivar ‘Arapohol’ using next-generation sequencing technology. The co...

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Detalles Bibliográficos
Autores principales: Liu, Xun-ju, Wang, Xiao-rong, Tang, Hao-ru, Chen, Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8245066/
https://www.ncbi.nlm.nih.gov/pubmed/34250230
http://dx.doi.org/10.1080/23802359.2020.1751003
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author Liu, Xun-ju
Wang, Xiao-rong
Tang, Hao-ru
Chen, Qing
author_facet Liu, Xun-ju
Wang, Xiao-rong
Tang, Hao-ru
Chen, Qing
author_sort Liu, Xun-ju
collection PubMed
description Blackberry (Rubus spp.) is an important hybrid fruit crop popular in the US Pacific Northwest and the European region with complex origins. In this study, we report the complete chloroplast genome sequence of a hybrid blackberry cultivar ‘Arapohol’ using next-generation sequencing technology. The complete chloroplast genome size is 156,621 bp. The genome contains 134 genes, including 40 tRNA genes, 86 protein-coding genes, and 8 rRNA genes. Phylogenetic analysis based on 11 complete chloroplast genomes revealed that taxa is closely related to Rubus niveus. The complete chloroplast genome of this Rubus sp. provides valuable information for understanding the origination of this crop species.
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spelling pubmed-82450662021-07-09 The complete chloroplast genome sequence of a hybrid blackberry (Rubus spp.) cultivar Liu, Xun-ju Wang, Xiao-rong Tang, Hao-ru Chen, Qing Mitochondrial DNA B Resour Mitogenome Announcement Blackberry (Rubus spp.) is an important hybrid fruit crop popular in the US Pacific Northwest and the European region with complex origins. In this study, we report the complete chloroplast genome sequence of a hybrid blackberry cultivar ‘Arapohol’ using next-generation sequencing technology. The complete chloroplast genome size is 156,621 bp. The genome contains 134 genes, including 40 tRNA genes, 86 protein-coding genes, and 8 rRNA genes. Phylogenetic analysis based on 11 complete chloroplast genomes revealed that taxa is closely related to Rubus niveus. The complete chloroplast genome of this Rubus sp. provides valuable information for understanding the origination of this crop species. Taylor & Francis 2021-06-29 /pmc/articles/PMC8245066/ /pubmed/34250230 http://dx.doi.org/10.1080/23802359.2020.1751003 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Xun-ju
Wang, Xiao-rong
Tang, Hao-ru
Chen, Qing
The complete chloroplast genome sequence of a hybrid blackberry (Rubus spp.) cultivar
title The complete chloroplast genome sequence of a hybrid blackberry (Rubus spp.) cultivar
title_full The complete chloroplast genome sequence of a hybrid blackberry (Rubus spp.) cultivar
title_fullStr The complete chloroplast genome sequence of a hybrid blackberry (Rubus spp.) cultivar
title_full_unstemmed The complete chloroplast genome sequence of a hybrid blackberry (Rubus spp.) cultivar
title_short The complete chloroplast genome sequence of a hybrid blackberry (Rubus spp.) cultivar
title_sort complete chloroplast genome sequence of a hybrid blackberry (rubus spp.) cultivar
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8245066/
https://www.ncbi.nlm.nih.gov/pubmed/34250230
http://dx.doi.org/10.1080/23802359.2020.1751003
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