The complete chloroplast genome sequences of the Rosa kokanica (Regel) Regel ex Juz. (Rosaceae)

Rosa kokanica is a deciduous shrub distributed in Central Asia. We determined the genomic characteristics of the complete chloroplast genome in R. kokanica with a de novo assembly strategy. The chloroplast genome was 156,802bp in length harboring 89 protein coding genes, 37 tRNA genes and eight rRNA...

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Autores principales: Choi, Tae-Young, Kim, Aleksey, Kim, Dong-Kap, Jung, Su-Young, Lee, Soo-Rang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8245069/
https://www.ncbi.nlm.nih.gov/pubmed/34250237
http://dx.doi.org/10.1080/23802359.2021.1944363
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author Choi, Tae-Young
Kim, Aleksey
Kim, Dong-Kap
Jung, Su-Young
Lee, Soo-Rang
author_facet Choi, Tae-Young
Kim, Aleksey
Kim, Dong-Kap
Jung, Su-Young
Lee, Soo-Rang
author_sort Choi, Tae-Young
collection PubMed
description Rosa kokanica is a deciduous shrub distributed in Central Asia. We determined the genomic characteristics of the complete chloroplast genome in R. kokanica with a de novo assembly strategy. The chloroplast genome was 156,802bp in length harboring 89 protein coding genes, 37 tRNA genes and eight rRNA genes. It exhibits typical quadripartite structure comprising a large single-copy (LSC) (85,899bp), a small single-copy (SSC) (18,773bp) and a pair of inverted repeats (IRs) (26,065bp). Phylogenetic analysis of 16 chloroplast genomes from Rosaceae revealed that the genus Rosa is a monophyletic group and the R. kokanica is clustered together with the congener, R. acicular.
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spelling pubmed-82450692021-07-09 The complete chloroplast genome sequences of the Rosa kokanica (Regel) Regel ex Juz. (Rosaceae) Choi, Tae-Young Kim, Aleksey Kim, Dong-Kap Jung, Su-Young Lee, Soo-Rang Mitochondrial DNA B Resour Mitogenome Announcement Rosa kokanica is a deciduous shrub distributed in Central Asia. We determined the genomic characteristics of the complete chloroplast genome in R. kokanica with a de novo assembly strategy. The chloroplast genome was 156,802bp in length harboring 89 protein coding genes, 37 tRNA genes and eight rRNA genes. It exhibits typical quadripartite structure comprising a large single-copy (LSC) (85,899bp), a small single-copy (SSC) (18,773bp) and a pair of inverted repeats (IRs) (26,065bp). Phylogenetic analysis of 16 chloroplast genomes from Rosaceae revealed that the genus Rosa is a monophyletic group and the R. kokanica is clustered together with the congener, R. acicular. Taylor & Francis 2021-06-28 /pmc/articles/PMC8245069/ /pubmed/34250237 http://dx.doi.org/10.1080/23802359.2021.1944363 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Choi, Tae-Young
Kim, Aleksey
Kim, Dong-Kap
Jung, Su-Young
Lee, Soo-Rang
The complete chloroplast genome sequences of the Rosa kokanica (Regel) Regel ex Juz. (Rosaceae)
title The complete chloroplast genome sequences of the Rosa kokanica (Regel) Regel ex Juz. (Rosaceae)
title_full The complete chloroplast genome sequences of the Rosa kokanica (Regel) Regel ex Juz. (Rosaceae)
title_fullStr The complete chloroplast genome sequences of the Rosa kokanica (Regel) Regel ex Juz. (Rosaceae)
title_full_unstemmed The complete chloroplast genome sequences of the Rosa kokanica (Regel) Regel ex Juz. (Rosaceae)
title_short The complete chloroplast genome sequences of the Rosa kokanica (Regel) Regel ex Juz. (Rosaceae)
title_sort complete chloroplast genome sequences of the rosa kokanica (regel) regel ex juz. (rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8245069/
https://www.ncbi.nlm.nih.gov/pubmed/34250237
http://dx.doi.org/10.1080/23802359.2021.1944363
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