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No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease

OBJECTIVES: A recent single‐cell RNA sequencing study by Wilk et al. suggested that plasmablasts can transdifferentiate into ‘developing neutrophils’ in patients with severe COVID‐19 disease. We explore the evidence for this. METHODS: We downloaded the original data and code used by the authors in t...

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Detalles Bibliográficos
Autores principales: Alquicira‐Hernandez, José, Powell, Joseph E, Phan, Tri Giang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8245277/
https://www.ncbi.nlm.nih.gov/pubmed/34221402
http://dx.doi.org/10.1002/cti2.1308
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author Alquicira‐Hernandez, José
Powell, Joseph E
Phan, Tri Giang
author_facet Alquicira‐Hernandez, José
Powell, Joseph E
Phan, Tri Giang
author_sort Alquicira‐Hernandez, José
collection PubMed
description OBJECTIVES: A recent single‐cell RNA sequencing study by Wilk et al. suggested that plasmablasts can transdifferentiate into ‘developing neutrophils’ in patients with severe COVID‐19 disease. We explore the evidence for this. METHODS: We downloaded the original data and code used by the authors in their study to replicate their findings and explore the possibility that regressing out variables may have led the authors to overfit their data. RESULTS: The lineage relationship between plasmablasts and developing neutrophils breaks down when key features are not regressed out, and the data are not overfitted during the analysis. CONCLUSION: Plasmablasts do not transdifferentiate into developing neutrophils. The single‐cell RNA sequencing is a powerful technique for biological discovery and hypothesis generation. However, caution should be exercised in the bioinformatic analysis and interpretation of the data and findings cross‐validated by orthogonal techniques.
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spelling pubmed-82452772021-07-02 No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease Alquicira‐Hernandez, José Powell, Joseph E Phan, Tri Giang Clin Transl Immunology Short Communication OBJECTIVES: A recent single‐cell RNA sequencing study by Wilk et al. suggested that plasmablasts can transdifferentiate into ‘developing neutrophils’ in patients with severe COVID‐19 disease. We explore the evidence for this. METHODS: We downloaded the original data and code used by the authors in their study to replicate their findings and explore the possibility that regressing out variables may have led the authors to overfit their data. RESULTS: The lineage relationship between plasmablasts and developing neutrophils breaks down when key features are not regressed out, and the data are not overfitted during the analysis. CONCLUSION: Plasmablasts do not transdifferentiate into developing neutrophils. The single‐cell RNA sequencing is a powerful technique for biological discovery and hypothesis generation. However, caution should be exercised in the bioinformatic analysis and interpretation of the data and findings cross‐validated by orthogonal techniques. John Wiley and Sons Inc. 2021-06-30 /pmc/articles/PMC8245277/ /pubmed/34221402 http://dx.doi.org/10.1002/cti2.1308 Text en © 2021 The Authors. Clinical & Translational Immunology published by John Wiley & Sons Australia, Ltd on behalf of Australian and New Zealand Society for Immunology, Inc https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Communication
Alquicira‐Hernandez, José
Powell, Joseph E
Phan, Tri Giang
No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
title No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
title_full No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
title_fullStr No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
title_full_unstemmed No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
title_short No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
title_sort no evidence that plasmablasts transdifferentiate into developing neutrophils in severe covid‐19 disease
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8245277/
https://www.ncbi.nlm.nih.gov/pubmed/34221402
http://dx.doi.org/10.1002/cti2.1308
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