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No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
OBJECTIVES: A recent single‐cell RNA sequencing study by Wilk et al. suggested that plasmablasts can transdifferentiate into ‘developing neutrophils’ in patients with severe COVID‐19 disease. We explore the evidence for this. METHODS: We downloaded the original data and code used by the authors in t...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8245277/ https://www.ncbi.nlm.nih.gov/pubmed/34221402 http://dx.doi.org/10.1002/cti2.1308 |
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author | Alquicira‐Hernandez, José Powell, Joseph E Phan, Tri Giang |
author_facet | Alquicira‐Hernandez, José Powell, Joseph E Phan, Tri Giang |
author_sort | Alquicira‐Hernandez, José |
collection | PubMed |
description | OBJECTIVES: A recent single‐cell RNA sequencing study by Wilk et al. suggested that plasmablasts can transdifferentiate into ‘developing neutrophils’ in patients with severe COVID‐19 disease. We explore the evidence for this. METHODS: We downloaded the original data and code used by the authors in their study to replicate their findings and explore the possibility that regressing out variables may have led the authors to overfit their data. RESULTS: The lineage relationship between plasmablasts and developing neutrophils breaks down when key features are not regressed out, and the data are not overfitted during the analysis. CONCLUSION: Plasmablasts do not transdifferentiate into developing neutrophils. The single‐cell RNA sequencing is a powerful technique for biological discovery and hypothesis generation. However, caution should be exercised in the bioinformatic analysis and interpretation of the data and findings cross‐validated by orthogonal techniques. |
format | Online Article Text |
id | pubmed-8245277 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82452772021-07-02 No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease Alquicira‐Hernandez, José Powell, Joseph E Phan, Tri Giang Clin Transl Immunology Short Communication OBJECTIVES: A recent single‐cell RNA sequencing study by Wilk et al. suggested that plasmablasts can transdifferentiate into ‘developing neutrophils’ in patients with severe COVID‐19 disease. We explore the evidence for this. METHODS: We downloaded the original data and code used by the authors in their study to replicate their findings and explore the possibility that regressing out variables may have led the authors to overfit their data. RESULTS: The lineage relationship between plasmablasts and developing neutrophils breaks down when key features are not regressed out, and the data are not overfitted during the analysis. CONCLUSION: Plasmablasts do not transdifferentiate into developing neutrophils. The single‐cell RNA sequencing is a powerful technique for biological discovery and hypothesis generation. However, caution should be exercised in the bioinformatic analysis and interpretation of the data and findings cross‐validated by orthogonal techniques. John Wiley and Sons Inc. 2021-06-30 /pmc/articles/PMC8245277/ /pubmed/34221402 http://dx.doi.org/10.1002/cti2.1308 Text en © 2021 The Authors. Clinical & Translational Immunology published by John Wiley & Sons Australia, Ltd on behalf of Australian and New Zealand Society for Immunology, Inc https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Communication Alquicira‐Hernandez, José Powell, Joseph E Phan, Tri Giang No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease |
title | No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease |
title_full | No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease |
title_fullStr | No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease |
title_full_unstemmed | No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease |
title_short | No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease |
title_sort | no evidence that plasmablasts transdifferentiate into developing neutrophils in severe covid‐19 disease |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8245277/ https://www.ncbi.nlm.nih.gov/pubmed/34221402 http://dx.doi.org/10.1002/cti2.1308 |
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