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A comparative experimental study of distributed storage engines for big spatial data processing using GeoSpark

With increasing numbers of GPS-equipped mobile devices, we are witnessing a deluge of spatial information that needs to be effectively and efficiently managed. Even though there are several distributed spatial data processing systems such as GeoSpark (Apache Sedona), the effects of underlying storag...

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Autores principales: Shin, Hansub, Lee, Kisung, Kwon, Hyuk-Yoon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8246422/
https://www.ncbi.nlm.nih.gov/pubmed/34226796
http://dx.doi.org/10.1007/s11227-021-03946-7
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author Shin, Hansub
Lee, Kisung
Kwon, Hyuk-Yoon
author_facet Shin, Hansub
Lee, Kisung
Kwon, Hyuk-Yoon
author_sort Shin, Hansub
collection PubMed
description With increasing numbers of GPS-equipped mobile devices, we are witnessing a deluge of spatial information that needs to be effectively and efficiently managed. Even though there are several distributed spatial data processing systems such as GeoSpark (Apache Sedona), the effects of underlying storage engines have not been well studied for spatial data processing. In this paper, we evaluate the performance of various distributed storage engines for processing large-scale spatial data using GeoSpark, a state-of-the-art distributed spatial data processing system running on top of Apache Spark. For our performance evaluation, we choose three distributed storage engines having different characteristics: (1) HDFS, (2) MongoDB, and (3) Amazon S3. To conduct our experimental study on a real cloud computing environment, we utilize Amazon EMR instances (up to 6 instances) for distributed spatial data processing. For the evaluation of big spatial data processing, we generate data sets considering four kinds of various data distributions and various data sizes up to one billion point records (38.5GB raw size). Through the extensive experiments, we measure the processing time of storage engines with the following variations: (1) sharding strategies in MongoDB, (2) caching effects, (3) data distributions, (4) data set sizes, (5) the number of running executors and storage nodes, and (6) the selectivity of queries. The major points observed from the experiments are summarized as follows. (1) The overall performance of MongoDB-based GeoSpark is degraded compared to HDFS- and S3-based GeoSpark in our experimental settings. (2) The performance of MongoDB-based GeoSpark is relatively improved in large-scale data sets compared to the others. (3) HDFS- and S3-based GeoSpark are more scalable to running executors and storage nodes compared to MongoDB-based GeoSpark. (4) The sharding strategy based on the spatial proximity significantly improves the performance of MongoDB-based GeoSpark. (5) S3- and HDFS-based GeoSpark show similar performances in all the environmental settings. (6) Caching in distributed environments improves the overall performance of spatial data processing. These results can be usefully utilized in decision-making of choosing the most adequate storage engine for big spatial data processing in a target distributed environment.
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spelling pubmed-82464222021-07-01 A comparative experimental study of distributed storage engines for big spatial data processing using GeoSpark Shin, Hansub Lee, Kisung Kwon, Hyuk-Yoon J Supercomput Article With increasing numbers of GPS-equipped mobile devices, we are witnessing a deluge of spatial information that needs to be effectively and efficiently managed. Even though there are several distributed spatial data processing systems such as GeoSpark (Apache Sedona), the effects of underlying storage engines have not been well studied for spatial data processing. In this paper, we evaluate the performance of various distributed storage engines for processing large-scale spatial data using GeoSpark, a state-of-the-art distributed spatial data processing system running on top of Apache Spark. For our performance evaluation, we choose three distributed storage engines having different characteristics: (1) HDFS, (2) MongoDB, and (3) Amazon S3. To conduct our experimental study on a real cloud computing environment, we utilize Amazon EMR instances (up to 6 instances) for distributed spatial data processing. For the evaluation of big spatial data processing, we generate data sets considering four kinds of various data distributions and various data sizes up to one billion point records (38.5GB raw size). Through the extensive experiments, we measure the processing time of storage engines with the following variations: (1) sharding strategies in MongoDB, (2) caching effects, (3) data distributions, (4) data set sizes, (5) the number of running executors and storage nodes, and (6) the selectivity of queries. The major points observed from the experiments are summarized as follows. (1) The overall performance of MongoDB-based GeoSpark is degraded compared to HDFS- and S3-based GeoSpark in our experimental settings. (2) The performance of MongoDB-based GeoSpark is relatively improved in large-scale data sets compared to the others. (3) HDFS- and S3-based GeoSpark are more scalable to running executors and storage nodes compared to MongoDB-based GeoSpark. (4) The sharding strategy based on the spatial proximity significantly improves the performance of MongoDB-based GeoSpark. (5) S3- and HDFS-based GeoSpark show similar performances in all the environmental settings. (6) Caching in distributed environments improves the overall performance of spatial data processing. These results can be usefully utilized in decision-making of choosing the most adequate storage engine for big spatial data processing in a target distributed environment. Springer US 2021-07-01 2022 /pmc/articles/PMC8246422/ /pubmed/34226796 http://dx.doi.org/10.1007/s11227-021-03946-7 Text en © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Shin, Hansub
Lee, Kisung
Kwon, Hyuk-Yoon
A comparative experimental study of distributed storage engines for big spatial data processing using GeoSpark
title A comparative experimental study of distributed storage engines for big spatial data processing using GeoSpark
title_full A comparative experimental study of distributed storage engines for big spatial data processing using GeoSpark
title_fullStr A comparative experimental study of distributed storage engines for big spatial data processing using GeoSpark
title_full_unstemmed A comparative experimental study of distributed storage engines for big spatial data processing using GeoSpark
title_short A comparative experimental study of distributed storage engines for big spatial data processing using GeoSpark
title_sort comparative experimental study of distributed storage engines for big spatial data processing using geospark
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8246422/
https://www.ncbi.nlm.nih.gov/pubmed/34226796
http://dx.doi.org/10.1007/s11227-021-03946-7
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