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On glyphosate–kaolinite surface interactions. A molecular dynamic study
Glyphosate is an important and widely used herbicide, its environmental behaviour being of scientific and public interest. Computational models of clay minerals and their interactions with small organic molecules are valuable in studying adsorption processes at an atomistic resolution. We analysed t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8247318/ https://www.ncbi.nlm.nih.gov/pubmed/34220276 http://dx.doi.org/10.1111/ejss.12971 |
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author | Galicia‐Andrés, Edgar Tunega, Daniel Gerzabek, Martin H. Oostenbrink, Chris |
author_facet | Galicia‐Andrés, Edgar Tunega, Daniel Gerzabek, Martin H. Oostenbrink, Chris |
author_sort | Galicia‐Andrés, Edgar |
collection | PubMed |
description | Glyphosate is an important and widely used herbicide, its environmental behaviour being of scientific and public interest. Computational models of clay minerals and their interactions with small organic molecules are valuable in studying adsorption processes at an atomistic resolution. We analysed the adsorption process of glyphosate on kaolinite, a clay mineral with a high abundance in several types of soils (e.g., of subtropical or tropical origin), in terms of the adsorption strength. The molecular interactions are characterized by monitoring the occurrence of hydrogen bonds, the orientation of the molecular dipole relative to the interface and the interaction energy. Two different ionic forms of glyphosate were considered: neutral and anionic (−1). It was shown that the main mechanism of the binding of both glyphosate forms to the aluminol surface of kaolinite is through multiple hydrogen bonds. The standard free energy of adsorption of neutral glyphosate from water solution to the basal octahedral surface of kaolinite was computed at −5 kJ mol(−1), whereas for the anionic form this quantity amounted to −14 kJ mol(−1). Our finding showed that kaolinite has an important contribution to overall adsorption capacity of soils for glyphosate, specifically in its anionic form. HIGHLIGHTS: The adsorption free energy of glyphosate on a kaolinite surface is quantified. Interactions are computed by quantum mechanics and by classical force field. Molecular interactions are characterized in terms of hydrogen bonds and orientations. The effect of polarization of the medium on the calculations is analysed; |
format | Online Article Text |
id | pubmed-8247318 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-82473182021-07-02 On glyphosate–kaolinite surface interactions. A molecular dynamic study Galicia‐Andrés, Edgar Tunega, Daniel Gerzabek, Martin H. Oostenbrink, Chris Eur J Soil Sci Special Issue: Ismom 2019 Glyphosate is an important and widely used herbicide, its environmental behaviour being of scientific and public interest. Computational models of clay minerals and their interactions with small organic molecules are valuable in studying adsorption processes at an atomistic resolution. We analysed the adsorption process of glyphosate on kaolinite, a clay mineral with a high abundance in several types of soils (e.g., of subtropical or tropical origin), in terms of the adsorption strength. The molecular interactions are characterized by monitoring the occurrence of hydrogen bonds, the orientation of the molecular dipole relative to the interface and the interaction energy. Two different ionic forms of glyphosate were considered: neutral and anionic (−1). It was shown that the main mechanism of the binding of both glyphosate forms to the aluminol surface of kaolinite is through multiple hydrogen bonds. The standard free energy of adsorption of neutral glyphosate from water solution to the basal octahedral surface of kaolinite was computed at −5 kJ mol(−1), whereas for the anionic form this quantity amounted to −14 kJ mol(−1). Our finding showed that kaolinite has an important contribution to overall adsorption capacity of soils for glyphosate, specifically in its anionic form. HIGHLIGHTS: The adsorption free energy of glyphosate on a kaolinite surface is quantified. Interactions are computed by quantum mechanics and by classical force field. Molecular interactions are characterized in terms of hydrogen bonds and orientations. The effect of polarization of the medium on the calculations is analysed; Blackwell Publishing Ltd 2020-05-06 2021-05 /pmc/articles/PMC8247318/ /pubmed/34220276 http://dx.doi.org/10.1111/ejss.12971 Text en © 2020 The Authors. European Journal of Soil Science published by John Wiley & Sons Ltd on behalf of British Society of Soil Science. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Special Issue: Ismom 2019 Galicia‐Andrés, Edgar Tunega, Daniel Gerzabek, Martin H. Oostenbrink, Chris On glyphosate–kaolinite surface interactions. A molecular dynamic study |
title | On glyphosate–kaolinite surface interactions. A molecular dynamic study |
title_full | On glyphosate–kaolinite surface interactions. A molecular dynamic study |
title_fullStr | On glyphosate–kaolinite surface interactions. A molecular dynamic study |
title_full_unstemmed | On glyphosate–kaolinite surface interactions. A molecular dynamic study |
title_short | On glyphosate–kaolinite surface interactions. A molecular dynamic study |
title_sort | on glyphosate–kaolinite surface interactions. a molecular dynamic study |
topic | Special Issue: Ismom 2019 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8247318/ https://www.ncbi.nlm.nih.gov/pubmed/34220276 http://dx.doi.org/10.1111/ejss.12971 |
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