Cargando…
Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies
Neuroscience studies require considerable bioinformatic support and expertise. Numerous high-dimensional and multimodal datasets must be preprocessed and integrated to create robust and reproducible analysis pipelines. We describe a common data elements and scalable data management infrastructure th...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8247461/ https://www.ncbi.nlm.nih.gov/pubmed/34220587 http://dx.doi.org/10.3389/fpsyt.2021.682495 |
_version_ | 1783716528457252864 |
---|---|
author | Kuplicki, Rayus Touthang, James Al Zoubi, Obada Mayeli, Ahmad Misaki, Masaya Aupperle, Robin L. Teague, T. Kent McKinney, Brett A. Paulus, Martin P. Bodurka, Jerzy |
author_facet | Kuplicki, Rayus Touthang, James Al Zoubi, Obada Mayeli, Ahmad Misaki, Masaya Aupperle, Robin L. Teague, T. Kent McKinney, Brett A. Paulus, Martin P. Bodurka, Jerzy |
author_sort | Kuplicki, Rayus |
collection | PubMed |
description | Neuroscience studies require considerable bioinformatic support and expertise. Numerous high-dimensional and multimodal datasets must be preprocessed and integrated to create robust and reproducible analysis pipelines. We describe a common data elements and scalable data management infrastructure that allows multiple analytics workflows to facilitate preprocessing, analysis and sharing of large-scale multi-level data. The process uses the Brain Imaging Data Structure (BIDS) format and supports MRI, fMRI, EEG, clinical, and laboratory data. The infrastructure provides support for other datasets such as Fitbit and flexibility for developers to customize the integration of new types of data. Exemplar results from 200+ participants and 11 different pipelines demonstrate the utility of the infrastructure. |
format | Online Article Text |
id | pubmed-8247461 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82474612021-07-02 Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies Kuplicki, Rayus Touthang, James Al Zoubi, Obada Mayeli, Ahmad Misaki, Masaya Aupperle, Robin L. Teague, T. Kent McKinney, Brett A. Paulus, Martin P. Bodurka, Jerzy Front Psychiatry Psychiatry Neuroscience studies require considerable bioinformatic support and expertise. Numerous high-dimensional and multimodal datasets must be preprocessed and integrated to create robust and reproducible analysis pipelines. We describe a common data elements and scalable data management infrastructure that allows multiple analytics workflows to facilitate preprocessing, analysis and sharing of large-scale multi-level data. The process uses the Brain Imaging Data Structure (BIDS) format and supports MRI, fMRI, EEG, clinical, and laboratory data. The infrastructure provides support for other datasets such as Fitbit and flexibility for developers to customize the integration of new types of data. Exemplar results from 200+ participants and 11 different pipelines demonstrate the utility of the infrastructure. Frontiers Media S.A. 2021-06-17 /pmc/articles/PMC8247461/ /pubmed/34220587 http://dx.doi.org/10.3389/fpsyt.2021.682495 Text en Copyright © 2021 Kuplicki, Touthang, Al Zoubi, Mayeli, Misaki, NeuroMAP-Investigators, Aupperle, Teague, McKinney, Paulus and Bodurka. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Psychiatry Kuplicki, Rayus Touthang, James Al Zoubi, Obada Mayeli, Ahmad Misaki, Masaya Aupperle, Robin L. Teague, T. Kent McKinney, Brett A. Paulus, Martin P. Bodurka, Jerzy Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies |
title | Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies |
title_full | Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies |
title_fullStr | Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies |
title_full_unstemmed | Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies |
title_short | Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies |
title_sort | common data elements, scalable data management infrastructure, and analytics workflows for large-scale neuroimaging studies |
topic | Psychiatry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8247461/ https://www.ncbi.nlm.nih.gov/pubmed/34220587 http://dx.doi.org/10.3389/fpsyt.2021.682495 |
work_keys_str_mv | AT kuplickirayus commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT touthangjames commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT alzoubiobada commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT mayeliahmad commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT misakimasaya commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT aupperlerobinl commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT teaguetkent commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT mckinneybretta commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT paulusmartinp commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies AT bodurkajerzy commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies |