Cargando…

Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies

Neuroscience studies require considerable bioinformatic support and expertise. Numerous high-dimensional and multimodal datasets must be preprocessed and integrated to create robust and reproducible analysis pipelines. We describe a common data elements and scalable data management infrastructure th...

Descripción completa

Detalles Bibliográficos
Autores principales: Kuplicki, Rayus, Touthang, James, Al Zoubi, Obada, Mayeli, Ahmad, Misaki, Masaya, Aupperle, Robin L., Teague, T. Kent, McKinney, Brett A., Paulus, Martin P., Bodurka, Jerzy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8247461/
https://www.ncbi.nlm.nih.gov/pubmed/34220587
http://dx.doi.org/10.3389/fpsyt.2021.682495
_version_ 1783716528457252864
author Kuplicki, Rayus
Touthang, James
Al Zoubi, Obada
Mayeli, Ahmad
Misaki, Masaya
Aupperle, Robin L.
Teague, T. Kent
McKinney, Brett A.
Paulus, Martin P.
Bodurka, Jerzy
author_facet Kuplicki, Rayus
Touthang, James
Al Zoubi, Obada
Mayeli, Ahmad
Misaki, Masaya
Aupperle, Robin L.
Teague, T. Kent
McKinney, Brett A.
Paulus, Martin P.
Bodurka, Jerzy
author_sort Kuplicki, Rayus
collection PubMed
description Neuroscience studies require considerable bioinformatic support and expertise. Numerous high-dimensional and multimodal datasets must be preprocessed and integrated to create robust and reproducible analysis pipelines. We describe a common data elements and scalable data management infrastructure that allows multiple analytics workflows to facilitate preprocessing, analysis and sharing of large-scale multi-level data. The process uses the Brain Imaging Data Structure (BIDS) format and supports MRI, fMRI, EEG, clinical, and laboratory data. The infrastructure provides support for other datasets such as Fitbit and flexibility for developers to customize the integration of new types of data. Exemplar results from 200+ participants and 11 different pipelines demonstrate the utility of the infrastructure.
format Online
Article
Text
id pubmed-8247461
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-82474612021-07-02 Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies Kuplicki, Rayus Touthang, James Al Zoubi, Obada Mayeli, Ahmad Misaki, Masaya Aupperle, Robin L. Teague, T. Kent McKinney, Brett A. Paulus, Martin P. Bodurka, Jerzy Front Psychiatry Psychiatry Neuroscience studies require considerable bioinformatic support and expertise. Numerous high-dimensional and multimodal datasets must be preprocessed and integrated to create robust and reproducible analysis pipelines. We describe a common data elements and scalable data management infrastructure that allows multiple analytics workflows to facilitate preprocessing, analysis and sharing of large-scale multi-level data. The process uses the Brain Imaging Data Structure (BIDS) format and supports MRI, fMRI, EEG, clinical, and laboratory data. The infrastructure provides support for other datasets such as Fitbit and flexibility for developers to customize the integration of new types of data. Exemplar results from 200+ participants and 11 different pipelines demonstrate the utility of the infrastructure. Frontiers Media S.A. 2021-06-17 /pmc/articles/PMC8247461/ /pubmed/34220587 http://dx.doi.org/10.3389/fpsyt.2021.682495 Text en Copyright © 2021 Kuplicki, Touthang, Al Zoubi, Mayeli, Misaki, NeuroMAP-Investigators, Aupperle, Teague, McKinney, Paulus and Bodurka. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Psychiatry
Kuplicki, Rayus
Touthang, James
Al Zoubi, Obada
Mayeli, Ahmad
Misaki, Masaya
Aupperle, Robin L.
Teague, T. Kent
McKinney, Brett A.
Paulus, Martin P.
Bodurka, Jerzy
Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies
title Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies
title_full Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies
title_fullStr Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies
title_full_unstemmed Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies
title_short Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies
title_sort common data elements, scalable data management infrastructure, and analytics workflows for large-scale neuroimaging studies
topic Psychiatry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8247461/
https://www.ncbi.nlm.nih.gov/pubmed/34220587
http://dx.doi.org/10.3389/fpsyt.2021.682495
work_keys_str_mv AT kuplickirayus commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT touthangjames commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT alzoubiobada commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT mayeliahmad commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT misakimasaya commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT aupperlerobinl commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT teaguetkent commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT mckinneybretta commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT paulusmartinp commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies
AT bodurkajerzy commondataelementsscalabledatamanagementinfrastructureandanalyticsworkflowsforlargescaleneuroimagingstudies