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Benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—HF_Lung_V1

A reliable, remote, and continuous real-time respiratory sound monitor with automated respiratory sound analysis ability is urgently required in many clinical scenarios—such as in monitoring disease progression of coronavirus disease 2019—to replace conventional auscultation with a handheld stethosc...

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Autores principales: Hsu, Fu-Shun, Huang, Shang-Ran, Huang, Chien-Wen, Huang, Chao-Jung, Cheng, Yuan-Ren, Chen, Chun-Chieh, Hsiao, Jack, Chen, Chung-Wei, Chen, Li-Chin, Lai, Yen-Chun, Hsu, Bi-Fang, Lin, Nian-Jhen, Tsai, Wan-Ling, Wu, Yi-Lin, Tseng, Tzu-Ling, Tseng, Ching-Ting, Chen, Yi-Tsun, Lai, Feipei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8248710/
https://www.ncbi.nlm.nih.gov/pubmed/34197556
http://dx.doi.org/10.1371/journal.pone.0254134
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author Hsu, Fu-Shun
Huang, Shang-Ran
Huang, Chien-Wen
Huang, Chao-Jung
Cheng, Yuan-Ren
Chen, Chun-Chieh
Hsiao, Jack
Chen, Chung-Wei
Chen, Li-Chin
Lai, Yen-Chun
Hsu, Bi-Fang
Lin, Nian-Jhen
Tsai, Wan-Ling
Wu, Yi-Lin
Tseng, Tzu-Ling
Tseng, Ching-Ting
Chen, Yi-Tsun
Lai, Feipei
author_facet Hsu, Fu-Shun
Huang, Shang-Ran
Huang, Chien-Wen
Huang, Chao-Jung
Cheng, Yuan-Ren
Chen, Chun-Chieh
Hsiao, Jack
Chen, Chung-Wei
Chen, Li-Chin
Lai, Yen-Chun
Hsu, Bi-Fang
Lin, Nian-Jhen
Tsai, Wan-Ling
Wu, Yi-Lin
Tseng, Tzu-Ling
Tseng, Ching-Ting
Chen, Yi-Tsun
Lai, Feipei
author_sort Hsu, Fu-Shun
collection PubMed
description A reliable, remote, and continuous real-time respiratory sound monitor with automated respiratory sound analysis ability is urgently required in many clinical scenarios—such as in monitoring disease progression of coronavirus disease 2019—to replace conventional auscultation with a handheld stethoscope. However, a robust computerized respiratory sound analysis algorithm for breath phase detection and adventitious sound detection at the recording level has not yet been validated in practical applications. In this study, we developed a lung sound database (HF_Lung_V1) comprising 9,765 audio files of lung sounds (duration of 15 s each), 34,095 inhalation labels, 18,349 exhalation labels, 13,883 continuous adventitious sound (CAS) labels (comprising 8,457 wheeze labels, 686 stridor labels, and 4,740 rhonchus labels), and 15,606 discontinuous adventitious sound labels (all crackles). We conducted benchmark tests using long short-term memory (LSTM), gated recurrent unit (GRU), bidirectional LSTM (BiLSTM), bidirectional GRU (BiGRU), convolutional neural network (CNN)-LSTM, CNN-GRU, CNN-BiLSTM, and CNN-BiGRU models for breath phase detection and adventitious sound detection. We also conducted a performance comparison between the LSTM-based and GRU-based models, between unidirectional and bidirectional models, and between models with and without a CNN. The results revealed that these models exhibited adequate performance in lung sound analysis. The GRU-based models outperformed, in terms of F1 scores and areas under the receiver operating characteristic curves, the LSTM-based models in most of the defined tasks. Furthermore, all bidirectional models outperformed their unidirectional counterparts. Finally, the addition of a CNN improved the accuracy of lung sound analysis, especially in the CAS detection tasks.
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spelling pubmed-82487102021-07-09 Benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—HF_Lung_V1 Hsu, Fu-Shun Huang, Shang-Ran Huang, Chien-Wen Huang, Chao-Jung Cheng, Yuan-Ren Chen, Chun-Chieh Hsiao, Jack Chen, Chung-Wei Chen, Li-Chin Lai, Yen-Chun Hsu, Bi-Fang Lin, Nian-Jhen Tsai, Wan-Ling Wu, Yi-Lin Tseng, Tzu-Ling Tseng, Ching-Ting Chen, Yi-Tsun Lai, Feipei PLoS One Research Article A reliable, remote, and continuous real-time respiratory sound monitor with automated respiratory sound analysis ability is urgently required in many clinical scenarios—such as in monitoring disease progression of coronavirus disease 2019—to replace conventional auscultation with a handheld stethoscope. However, a robust computerized respiratory sound analysis algorithm for breath phase detection and adventitious sound detection at the recording level has not yet been validated in practical applications. In this study, we developed a lung sound database (HF_Lung_V1) comprising 9,765 audio files of lung sounds (duration of 15 s each), 34,095 inhalation labels, 18,349 exhalation labels, 13,883 continuous adventitious sound (CAS) labels (comprising 8,457 wheeze labels, 686 stridor labels, and 4,740 rhonchus labels), and 15,606 discontinuous adventitious sound labels (all crackles). We conducted benchmark tests using long short-term memory (LSTM), gated recurrent unit (GRU), bidirectional LSTM (BiLSTM), bidirectional GRU (BiGRU), convolutional neural network (CNN)-LSTM, CNN-GRU, CNN-BiLSTM, and CNN-BiGRU models for breath phase detection and adventitious sound detection. We also conducted a performance comparison between the LSTM-based and GRU-based models, between unidirectional and bidirectional models, and between models with and without a CNN. The results revealed that these models exhibited adequate performance in lung sound analysis. The GRU-based models outperformed, in terms of F1 scores and areas under the receiver operating characteristic curves, the LSTM-based models in most of the defined tasks. Furthermore, all bidirectional models outperformed their unidirectional counterparts. Finally, the addition of a CNN improved the accuracy of lung sound analysis, especially in the CAS detection tasks. Public Library of Science 2021-07-01 /pmc/articles/PMC8248710/ /pubmed/34197556 http://dx.doi.org/10.1371/journal.pone.0254134 Text en © 2021 Hsu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hsu, Fu-Shun
Huang, Shang-Ran
Huang, Chien-Wen
Huang, Chao-Jung
Cheng, Yuan-Ren
Chen, Chun-Chieh
Hsiao, Jack
Chen, Chung-Wei
Chen, Li-Chin
Lai, Yen-Chun
Hsu, Bi-Fang
Lin, Nian-Jhen
Tsai, Wan-Ling
Wu, Yi-Lin
Tseng, Tzu-Ling
Tseng, Ching-Ting
Chen, Yi-Tsun
Lai, Feipei
Benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—HF_Lung_V1
title Benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—HF_Lung_V1
title_full Benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—HF_Lung_V1
title_fullStr Benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—HF_Lung_V1
title_full_unstemmed Benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—HF_Lung_V1
title_short Benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—HF_Lung_V1
title_sort benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—hf_lung_v1
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8248710/
https://www.ncbi.nlm.nih.gov/pubmed/34197556
http://dx.doi.org/10.1371/journal.pone.0254134
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