StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs

Nucleic acid secondary structures play important roles in regulating biological processes. StemLoop-Finder is a computational tool to recognize and annotate conserved structural motifs in large data sets. The program is optimized for the detection of stem-loop structures that may serve as origins of...

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Detalles Bibliográficos
Autores principales: Pratt, Alyssa A., Torrance, Ellis L., Kasun, George W., Stedman, Kenneth M., de la Higuera, Ignacio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2021
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8248882/
https://www.ncbi.nlm.nih.gov/pubmed/34197205
http://dx.doi.org/10.1128/MRA.00424-21
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author Pratt, Alyssa A.
Torrance, Ellis L.
Kasun, George W.
Stedman, Kenneth M.
de la Higuera, Ignacio
author_facet Pratt, Alyssa A.
Torrance, Ellis L.
Kasun, George W.
Stedman, Kenneth M.
de la Higuera, Ignacio
author_sort Pratt, Alyssa A.
collection PubMed
description Nucleic acid secondary structures play important roles in regulating biological processes. StemLoop-Finder is a computational tool to recognize and annotate conserved structural motifs in large data sets. The program is optimized for the detection of stem-loop structures that may serve as origins of replication in circular replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses.
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spelling pubmed-82488822021-07-09 StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs Pratt, Alyssa A. Torrance, Ellis L. Kasun, George W. Stedman, Kenneth M. de la Higuera, Ignacio Microbiol Resour Announc Databases and Software Nucleic acid secondary structures play important roles in regulating biological processes. StemLoop-Finder is a computational tool to recognize and annotate conserved structural motifs in large data sets. The program is optimized for the detection of stem-loop structures that may serve as origins of replication in circular replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses. American Society for Microbiology 2021-07-01 /pmc/articles/PMC8248882/ /pubmed/34197205 http://dx.doi.org/10.1128/MRA.00424-21 Text en Copyright © 2021 Pratt et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Databases and Software
Pratt, Alyssa A.
Torrance, Ellis L.
Kasun, George W.
Stedman, Kenneth M.
de la Higuera, Ignacio
StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs
title StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs
title_full StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs
title_fullStr StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs
title_full_unstemmed StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs
title_short StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs
title_sort stemloop-finder: a tool for the detection of dna hairpins with conserved motifs
topic Databases and Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8248882/
https://www.ncbi.nlm.nih.gov/pubmed/34197205
http://dx.doi.org/10.1128/MRA.00424-21
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