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Synthetic polarization-sensitive optical coherence tomography by deep learning

Polarization-sensitive optical coherence tomography (PS-OCT) is a high-resolution label-free optical biomedical imaging modality that is sensitive to the microstructural architecture in tissue that gives rise to form birefringence, such as collagen or muscle fibers. To enable polarization sensitivit...

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Autores principales: Sun, Yi, Wang, Jianfeng, Shi, Jindou, Boppart, Stephen A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249385/
https://www.ncbi.nlm.nih.gov/pubmed/34211104
http://dx.doi.org/10.1038/s41746-021-00475-8
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author Sun, Yi
Wang, Jianfeng
Shi, Jindou
Boppart, Stephen A.
author_facet Sun, Yi
Wang, Jianfeng
Shi, Jindou
Boppart, Stephen A.
author_sort Sun, Yi
collection PubMed
description Polarization-sensitive optical coherence tomography (PS-OCT) is a high-resolution label-free optical biomedical imaging modality that is sensitive to the microstructural architecture in tissue that gives rise to form birefringence, such as collagen or muscle fibers. To enable polarization sensitivity in an OCT system, however, requires additional hardware and complexity. We developed a deep-learning method to synthesize PS-OCT images by training a generative adversarial network (GAN) on OCT intensity and PS-OCT images. The synthesis accuracy was first evaluated by the structural similarity index (SSIM) between the synthetic and real PS-OCT images. Furthermore, the effectiveness of the computational PS-OCT images was validated by separately training two image classifiers using the real and synthetic PS-OCT images for cancer/normal classification. The similar classification results of the two trained classifiers demonstrate that the predicted PS-OCT images can be potentially used interchangeably in cancer diagnosis applications. In addition, we applied the trained GAN models on OCT images collected from a separate OCT imaging system, and the synthetic PS-OCT images correlate well with the real PS-OCT image collected from the same sample sites using the PS-OCT imaging system. This computational PS-OCT imaging method has the potential to reduce the cost, complexity, and need for hardware-based PS-OCT imaging systems.
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spelling pubmed-82493852021-07-20 Synthetic polarization-sensitive optical coherence tomography by deep learning Sun, Yi Wang, Jianfeng Shi, Jindou Boppart, Stephen A. NPJ Digit Med Article Polarization-sensitive optical coherence tomography (PS-OCT) is a high-resolution label-free optical biomedical imaging modality that is sensitive to the microstructural architecture in tissue that gives rise to form birefringence, such as collagen or muscle fibers. To enable polarization sensitivity in an OCT system, however, requires additional hardware and complexity. We developed a deep-learning method to synthesize PS-OCT images by training a generative adversarial network (GAN) on OCT intensity and PS-OCT images. The synthesis accuracy was first evaluated by the structural similarity index (SSIM) between the synthetic and real PS-OCT images. Furthermore, the effectiveness of the computational PS-OCT images was validated by separately training two image classifiers using the real and synthetic PS-OCT images for cancer/normal classification. The similar classification results of the two trained classifiers demonstrate that the predicted PS-OCT images can be potentially used interchangeably in cancer diagnosis applications. In addition, we applied the trained GAN models on OCT images collected from a separate OCT imaging system, and the synthetic PS-OCT images correlate well with the real PS-OCT image collected from the same sample sites using the PS-OCT imaging system. This computational PS-OCT imaging method has the potential to reduce the cost, complexity, and need for hardware-based PS-OCT imaging systems. Nature Publishing Group UK 2021-07-01 /pmc/articles/PMC8249385/ /pubmed/34211104 http://dx.doi.org/10.1038/s41746-021-00475-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sun, Yi
Wang, Jianfeng
Shi, Jindou
Boppart, Stephen A.
Synthetic polarization-sensitive optical coherence tomography by deep learning
title Synthetic polarization-sensitive optical coherence tomography by deep learning
title_full Synthetic polarization-sensitive optical coherence tomography by deep learning
title_fullStr Synthetic polarization-sensitive optical coherence tomography by deep learning
title_full_unstemmed Synthetic polarization-sensitive optical coherence tomography by deep learning
title_short Synthetic polarization-sensitive optical coherence tomography by deep learning
title_sort synthetic polarization-sensitive optical coherence tomography by deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249385/
https://www.ncbi.nlm.nih.gov/pubmed/34211104
http://dx.doi.org/10.1038/s41746-021-00475-8
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