Determination of k-mer density in a DNA sequence and subsequent cluster formation algorithm based on the application of electronic filter

We describe a novel algorithm for information recovery from DNA sequences by using a digital filter. This work proposes a three-part algorithm to decide the k-mer or q-gram word density. Employing a finite impulse response digital filter, one can calculate the sequence's k-mer or q-gram word de...

Descripción completa

Detalles Bibliográficos
Autores principales: Sarkar, Bimal Kumar, Sharma, Ashish Ranjan, Bhattacharya, Manojit, Sharma, Garima, Lee, Sang-Soo, Chakraborty, Chiranjib
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249421/
https://www.ncbi.nlm.nih.gov/pubmed/34211040
http://dx.doi.org/10.1038/s41598-021-93154-3

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249421/
https://www.ncbi.nlm.nih.gov/pubmed/34211040
http://dx.doi.org/10.1038/s41598-021-93154-3

Ejemplares similares