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Eight soybean reference genome resources from varying latitudes and agronomic traits
Comparative analysis of multiple reference genomes representing diverse genetic backgrounds is critical for understanding the role of key alleles important in domestication and genetic breeding of important crops such as soybean. To enrich the genetic resources for soybean, we describe the generatio...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249447/ https://www.ncbi.nlm.nih.gov/pubmed/34210987 http://dx.doi.org/10.1038/s41597-021-00947-2 |
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author | Chu, Jeffrey Shih-Chieh Peng, Bo Tang, Kuanqiang Yi, Xingxing Zhou, Huangkai Wang, Huan Li, Guang Leng, Jiantian Chen, Nansheng Feng, Xianzhong |
author_facet | Chu, Jeffrey Shih-Chieh Peng, Bo Tang, Kuanqiang Yi, Xingxing Zhou, Huangkai Wang, Huan Li, Guang Leng, Jiantian Chen, Nansheng Feng, Xianzhong |
author_sort | Chu, Jeffrey Shih-Chieh |
collection | PubMed |
description | Comparative analysis of multiple reference genomes representing diverse genetic backgrounds is critical for understanding the role of key alleles important in domestication and genetic breeding of important crops such as soybean. To enrich the genetic resources for soybean, we describe the generation, technical assessment, and preliminary genomic variation analysis of eight de novo reference-grade soybean genome assemblies from wild and cultivated accessions. These resources represent soybeans cultured at different latitudes and exhibiting different agronomical traits. Of these eight soybeans, five are from new accessions that have not been sequenced before. We demonstrate the usage of these genomes to identify small and large genomic variations affecting known genes as well as screening for genic PAV regions for identifying candidates for further functional studies. |
format | Online Article Text |
id | pubmed-8249447 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82494472021-07-20 Eight soybean reference genome resources from varying latitudes and agronomic traits Chu, Jeffrey Shih-Chieh Peng, Bo Tang, Kuanqiang Yi, Xingxing Zhou, Huangkai Wang, Huan Li, Guang Leng, Jiantian Chen, Nansheng Feng, Xianzhong Sci Data Data Descriptor Comparative analysis of multiple reference genomes representing diverse genetic backgrounds is critical for understanding the role of key alleles important in domestication and genetic breeding of important crops such as soybean. To enrich the genetic resources for soybean, we describe the generation, technical assessment, and preliminary genomic variation analysis of eight de novo reference-grade soybean genome assemblies from wild and cultivated accessions. These resources represent soybeans cultured at different latitudes and exhibiting different agronomical traits. Of these eight soybeans, five are from new accessions that have not been sequenced before. We demonstrate the usage of these genomes to identify small and large genomic variations affecting known genes as well as screening for genic PAV regions for identifying candidates for further functional studies. Nature Publishing Group UK 2021-07-01 /pmc/articles/PMC8249447/ /pubmed/34210987 http://dx.doi.org/10.1038/s41597-021-00947-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Chu, Jeffrey Shih-Chieh Peng, Bo Tang, Kuanqiang Yi, Xingxing Zhou, Huangkai Wang, Huan Li, Guang Leng, Jiantian Chen, Nansheng Feng, Xianzhong Eight soybean reference genome resources from varying latitudes and agronomic traits |
title | Eight soybean reference genome resources from varying latitudes and agronomic traits |
title_full | Eight soybean reference genome resources from varying latitudes and agronomic traits |
title_fullStr | Eight soybean reference genome resources from varying latitudes and agronomic traits |
title_full_unstemmed | Eight soybean reference genome resources from varying latitudes and agronomic traits |
title_short | Eight soybean reference genome resources from varying latitudes and agronomic traits |
title_sort | eight soybean reference genome resources from varying latitudes and agronomic traits |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249447/ https://www.ncbi.nlm.nih.gov/pubmed/34210987 http://dx.doi.org/10.1038/s41597-021-00947-2 |
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