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A convolutional neural-network framework for modelling auditory sensory cells and synapses

In classical computational neuroscience, analytical model descriptions are derived from neuronal recordings to mimic the underlying biological system. These neuronal models are typically slow to compute and cannot be integrated within large-scale neuronal simulation frameworks. We present a hybrid,...

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Autores principales: Drakopoulos, Fotios, Baby, Deepak, Verhulst, Sarah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249591/
https://www.ncbi.nlm.nih.gov/pubmed/34211095
http://dx.doi.org/10.1038/s42003-021-02341-5
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author Drakopoulos, Fotios
Baby, Deepak
Verhulst, Sarah
author_facet Drakopoulos, Fotios
Baby, Deepak
Verhulst, Sarah
author_sort Drakopoulos, Fotios
collection PubMed
description In classical computational neuroscience, analytical model descriptions are derived from neuronal recordings to mimic the underlying biological system. These neuronal models are typically slow to compute and cannot be integrated within large-scale neuronal simulation frameworks. We present a hybrid, machine-learning and computational-neuroscience approach that transforms analytical models of sensory neurons and synapses into deep-neural-network (DNN) neuronal units with the same biophysical properties. Our DNN-model architecture comprises parallel and differentiable equations that can be used for backpropagation in neuro-engineering applications, and offers a simulation run-time improvement factor of 70 and 280 on CPU or GPU systems respectively. We focussed our development on auditory neurons and synapses, and show that our DNN-model architecture can be extended to a variety of existing analytical models. We describe how our approach for auditory models can be applied to other neuron and synapse types to help accelerate the development of large-scale brain networks and DNN-based treatments of the pathological system.
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spelling pubmed-82495912021-07-20 A convolutional neural-network framework for modelling auditory sensory cells and synapses Drakopoulos, Fotios Baby, Deepak Verhulst, Sarah Commun Biol Article In classical computational neuroscience, analytical model descriptions are derived from neuronal recordings to mimic the underlying biological system. These neuronal models are typically slow to compute and cannot be integrated within large-scale neuronal simulation frameworks. We present a hybrid, machine-learning and computational-neuroscience approach that transforms analytical models of sensory neurons and synapses into deep-neural-network (DNN) neuronal units with the same biophysical properties. Our DNN-model architecture comprises parallel and differentiable equations that can be used for backpropagation in neuro-engineering applications, and offers a simulation run-time improvement factor of 70 and 280 on CPU or GPU systems respectively. We focussed our development on auditory neurons and synapses, and show that our DNN-model architecture can be extended to a variety of existing analytical models. We describe how our approach for auditory models can be applied to other neuron and synapse types to help accelerate the development of large-scale brain networks and DNN-based treatments of the pathological system. Nature Publishing Group UK 2021-07-01 /pmc/articles/PMC8249591/ /pubmed/34211095 http://dx.doi.org/10.1038/s42003-021-02341-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Drakopoulos, Fotios
Baby, Deepak
Verhulst, Sarah
A convolutional neural-network framework for modelling auditory sensory cells and synapses
title A convolutional neural-network framework for modelling auditory sensory cells and synapses
title_full A convolutional neural-network framework for modelling auditory sensory cells and synapses
title_fullStr A convolutional neural-network framework for modelling auditory sensory cells and synapses
title_full_unstemmed A convolutional neural-network framework for modelling auditory sensory cells and synapses
title_short A convolutional neural-network framework for modelling auditory sensory cells and synapses
title_sort convolutional neural-network framework for modelling auditory sensory cells and synapses
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249591/
https://www.ncbi.nlm.nih.gov/pubmed/34211095
http://dx.doi.org/10.1038/s42003-021-02341-5
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