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A convolutional neural-network framework for modelling auditory sensory cells and synapses
In classical computational neuroscience, analytical model descriptions are derived from neuronal recordings to mimic the underlying biological system. These neuronal models are typically slow to compute and cannot be integrated within large-scale neuronal simulation frameworks. We present a hybrid,...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249591/ https://www.ncbi.nlm.nih.gov/pubmed/34211095 http://dx.doi.org/10.1038/s42003-021-02341-5 |
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author | Drakopoulos, Fotios Baby, Deepak Verhulst, Sarah |
author_facet | Drakopoulos, Fotios Baby, Deepak Verhulst, Sarah |
author_sort | Drakopoulos, Fotios |
collection | PubMed |
description | In classical computational neuroscience, analytical model descriptions are derived from neuronal recordings to mimic the underlying biological system. These neuronal models are typically slow to compute and cannot be integrated within large-scale neuronal simulation frameworks. We present a hybrid, machine-learning and computational-neuroscience approach that transforms analytical models of sensory neurons and synapses into deep-neural-network (DNN) neuronal units with the same biophysical properties. Our DNN-model architecture comprises parallel and differentiable equations that can be used for backpropagation in neuro-engineering applications, and offers a simulation run-time improvement factor of 70 and 280 on CPU or GPU systems respectively. We focussed our development on auditory neurons and synapses, and show that our DNN-model architecture can be extended to a variety of existing analytical models. We describe how our approach for auditory models can be applied to other neuron and synapse types to help accelerate the development of large-scale brain networks and DNN-based treatments of the pathological system. |
format | Online Article Text |
id | pubmed-8249591 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82495912021-07-20 A convolutional neural-network framework for modelling auditory sensory cells and synapses Drakopoulos, Fotios Baby, Deepak Verhulst, Sarah Commun Biol Article In classical computational neuroscience, analytical model descriptions are derived from neuronal recordings to mimic the underlying biological system. These neuronal models are typically slow to compute and cannot be integrated within large-scale neuronal simulation frameworks. We present a hybrid, machine-learning and computational-neuroscience approach that transforms analytical models of sensory neurons and synapses into deep-neural-network (DNN) neuronal units with the same biophysical properties. Our DNN-model architecture comprises parallel and differentiable equations that can be used for backpropagation in neuro-engineering applications, and offers a simulation run-time improvement factor of 70 and 280 on CPU or GPU systems respectively. We focussed our development on auditory neurons and synapses, and show that our DNN-model architecture can be extended to a variety of existing analytical models. We describe how our approach for auditory models can be applied to other neuron and synapse types to help accelerate the development of large-scale brain networks and DNN-based treatments of the pathological system. Nature Publishing Group UK 2021-07-01 /pmc/articles/PMC8249591/ /pubmed/34211095 http://dx.doi.org/10.1038/s42003-021-02341-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Drakopoulos, Fotios Baby, Deepak Verhulst, Sarah A convolutional neural-network framework for modelling auditory sensory cells and synapses |
title | A convolutional neural-network framework for modelling auditory sensory cells and synapses |
title_full | A convolutional neural-network framework for modelling auditory sensory cells and synapses |
title_fullStr | A convolutional neural-network framework for modelling auditory sensory cells and synapses |
title_full_unstemmed | A convolutional neural-network framework for modelling auditory sensory cells and synapses |
title_short | A convolutional neural-network framework for modelling auditory sensory cells and synapses |
title_sort | convolutional neural-network framework for modelling auditory sensory cells and synapses |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8249591/ https://www.ncbi.nlm.nih.gov/pubmed/34211095 http://dx.doi.org/10.1038/s42003-021-02341-5 |
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