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Magnetization Transfer to Enhance NOE Cross‐Peaks among Labile Protons: Applications to Imino–Imino Sequential Walks in SARS‐CoV‐2‐Derived RNAs

2D NOESY plays a central role in structural NMR spectroscopy. We have recently discussed methods that rely on solvent‐driven exchanges to enhance NOE correlations between exchangeable and non‐exchangeable protons in nucleic acids. Such methods, however, fail when trying to establish connectivities w...

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Autores principales: Novakovic, Mihajlo, Kupče, Ēriks, Scherf, Tali, Oxenfarth, Andreas, Schnieders, Robbin, Grün, J. Tassilo, Wirmer‐Bartoschek, Julia, Richter, Christian, Schwalbe, Harald, Frydman, Lucio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8251384/
https://www.ncbi.nlm.nih.gov/pubmed/33683819
http://dx.doi.org/10.1002/anie.202015948
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author Novakovic, Mihajlo
Kupče, Ēriks
Scherf, Tali
Oxenfarth, Andreas
Schnieders, Robbin
Grün, J. Tassilo
Wirmer‐Bartoschek, Julia
Richter, Christian
Schwalbe, Harald
Frydman, Lucio
author_facet Novakovic, Mihajlo
Kupče, Ēriks
Scherf, Tali
Oxenfarth, Andreas
Schnieders, Robbin
Grün, J. Tassilo
Wirmer‐Bartoschek, Julia
Richter, Christian
Schwalbe, Harald
Frydman, Lucio
author_sort Novakovic, Mihajlo
collection PubMed
description 2D NOESY plays a central role in structural NMR spectroscopy. We have recently discussed methods that rely on solvent‐driven exchanges to enhance NOE correlations between exchangeable and non‐exchangeable protons in nucleic acids. Such methods, however, fail when trying to establish connectivities within pools of labile protons. This study introduces an alternative that also enhances NOEs between such labile sites, based on encoding a priori selected peaks by selective saturations. The resulting selective magnetization transfer (SMT) experiment proves particularly useful for enhancing the imino–imino cross‐peaks in RNAs, which is a first step in the NMR resolution of these structures. The origins of these enhancements are discussed, and their potential is demonstrated on RNA fragments derived from the genome of SARS‐CoV‐2, recorded with better sensitivity and an order of magnitude faster than conventional 2D counterparts.
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spelling pubmed-82513842021-07-02 Magnetization Transfer to Enhance NOE Cross‐Peaks among Labile Protons: Applications to Imino–Imino Sequential Walks in SARS‐CoV‐2‐Derived RNAs Novakovic, Mihajlo Kupče, Ēriks Scherf, Tali Oxenfarth, Andreas Schnieders, Robbin Grün, J. Tassilo Wirmer‐Bartoschek, Julia Richter, Christian Schwalbe, Harald Frydman, Lucio Angew Chem Int Ed Engl Research Articles 2D NOESY plays a central role in structural NMR spectroscopy. We have recently discussed methods that rely on solvent‐driven exchanges to enhance NOE correlations between exchangeable and non‐exchangeable protons in nucleic acids. Such methods, however, fail when trying to establish connectivities within pools of labile protons. This study introduces an alternative that also enhances NOEs between such labile sites, based on encoding a priori selected peaks by selective saturations. The resulting selective magnetization transfer (SMT) experiment proves particularly useful for enhancing the imino–imino cross‐peaks in RNAs, which is a first step in the NMR resolution of these structures. The origins of these enhancements are discussed, and their potential is demonstrated on RNA fragments derived from the genome of SARS‐CoV‐2, recorded with better sensitivity and an order of magnitude faster than conventional 2D counterparts. John Wiley and Sons Inc. 2021-05-04 2021-05-17 /pmc/articles/PMC8251384/ /pubmed/33683819 http://dx.doi.org/10.1002/anie.202015948 Text en © 2021 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Novakovic, Mihajlo
Kupče, Ēriks
Scherf, Tali
Oxenfarth, Andreas
Schnieders, Robbin
Grün, J. Tassilo
Wirmer‐Bartoschek, Julia
Richter, Christian
Schwalbe, Harald
Frydman, Lucio
Magnetization Transfer to Enhance NOE Cross‐Peaks among Labile Protons: Applications to Imino–Imino Sequential Walks in SARS‐CoV‐2‐Derived RNAs
title Magnetization Transfer to Enhance NOE Cross‐Peaks among Labile Protons: Applications to Imino–Imino Sequential Walks in SARS‐CoV‐2‐Derived RNAs
title_full Magnetization Transfer to Enhance NOE Cross‐Peaks among Labile Protons: Applications to Imino–Imino Sequential Walks in SARS‐CoV‐2‐Derived RNAs
title_fullStr Magnetization Transfer to Enhance NOE Cross‐Peaks among Labile Protons: Applications to Imino–Imino Sequential Walks in SARS‐CoV‐2‐Derived RNAs
title_full_unstemmed Magnetization Transfer to Enhance NOE Cross‐Peaks among Labile Protons: Applications to Imino–Imino Sequential Walks in SARS‐CoV‐2‐Derived RNAs
title_short Magnetization Transfer to Enhance NOE Cross‐Peaks among Labile Protons: Applications to Imino–Imino Sequential Walks in SARS‐CoV‐2‐Derived RNAs
title_sort magnetization transfer to enhance noe cross‐peaks among labile protons: applications to imino–imino sequential walks in sars‐cov‐2‐derived rnas
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8251384/
https://www.ncbi.nlm.nih.gov/pubmed/33683819
http://dx.doi.org/10.1002/anie.202015948
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