Cargando…

SimPET—An open online platform for the Monte Carlo simulation of realistic brain PET data. Validation for (18)F‐FDG scans

PURPOSE: SimPET (www.sim‐pet.org) is a free cloud‐based platform for the generation of realistic brain positron emission tomography (PET) data. In this work, we introduce the key features of the platform. In addition, we validate the platform by performing a comparison between simulated healthy brai...

Descripción completa

Detalles Bibliográficos
Autores principales: Paredes‐Pacheco, José, López‐González, Francisco Javier, Silva‐Rodríguez, Jesús, Efthimiou, Nikos, Niñerola‐Baizán, Aida, Ruibal, Álvaro, Roé‐Vellvé, Núria, Aguiar, Pablo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8252452/
https://www.ncbi.nlm.nih.gov/pubmed/33713354
http://dx.doi.org/10.1002/mp.14838
_version_ 1783717303542611968
author Paredes‐Pacheco, José
López‐González, Francisco Javier
Silva‐Rodríguez, Jesús
Efthimiou, Nikos
Niñerola‐Baizán, Aida
Ruibal, Álvaro
Roé‐Vellvé, Núria
Aguiar, Pablo
author_facet Paredes‐Pacheco, José
López‐González, Francisco Javier
Silva‐Rodríguez, Jesús
Efthimiou, Nikos
Niñerola‐Baizán, Aida
Ruibal, Álvaro
Roé‐Vellvé, Núria
Aguiar, Pablo
author_sort Paredes‐Pacheco, José
collection PubMed
description PURPOSE: SimPET (www.sim‐pet.org) is a free cloud‐based platform for the generation of realistic brain positron emission tomography (PET) data. In this work, we introduce the key features of the platform. In addition, we validate the platform by performing a comparison between simulated healthy brain FDG‐PET images and real healthy subject data for three commercial scanners (GE Advance NXi, GE Discovery ST, and Siemens Biograph mCT). METHODS: The platform provides a graphical user interface to a set of automatic scripts taking care of the code execution for the phantom generation, simulation (SimSET), and tomographic image reconstruction (STIR). We characterize the performance using activity and attenuation maps derived from PET/CT and MRI data of 25 healthy subjects acquired with a GE Discovery ST. We then use the created maps to generate synthetic data for the GE Discovery ST, the GE Advance NXi, and the Siemens Biograph mCT. The validation was carried out by evaluating Bland‐Altman differences between real and simulated images for each scanner. In addition, SPM voxel‐wise comparison was performed to highlight regional differences. Examples for amyloid PET and for the generation of ground‐truth pathological patients are included. RESULTS: The platform can be efficiently used for generating realistic simulated FDG‐PET images in a reasonable amount of time. The validation showed small differences between SimPET and acquired FDG‐PET images, with errors below 10% for 98.09% (GE Discovery ST), 95.09% (GE Advance NXi), and 91.35% (Siemens Biograph mCT) of the voxels. Nevertheless, our SPM analysis showed significant regional differences between the simulated images and real healthy patients, and thus, the use of the platform for converting control subject databases between different scanners requires further investigation. CONCLUSIONS: The presented platform can potentially allow scientists in clinical and research settings to perform MC simulation experiments without the need for high‐end hardware or advanced computing knowledge and in a reasonable amount of time.
format Online
Article
Text
id pubmed-8252452
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-82524522021-07-07 SimPET—An open online platform for the Monte Carlo simulation of realistic brain PET data. Validation for (18)F‐FDG scans Paredes‐Pacheco, José López‐González, Francisco Javier Silva‐Rodríguez, Jesús Efthimiou, Nikos Niñerola‐Baizán, Aida Ruibal, Álvaro Roé‐Vellvé, Núria Aguiar, Pablo Med Phys EMERGING IMAGING AND THERAPY MODALITIES PURPOSE: SimPET (www.sim‐pet.org) is a free cloud‐based platform for the generation of realistic brain positron emission tomography (PET) data. In this work, we introduce the key features of the platform. In addition, we validate the platform by performing a comparison between simulated healthy brain FDG‐PET images and real healthy subject data for three commercial scanners (GE Advance NXi, GE Discovery ST, and Siemens Biograph mCT). METHODS: The platform provides a graphical user interface to a set of automatic scripts taking care of the code execution for the phantom generation, simulation (SimSET), and tomographic image reconstruction (STIR). We characterize the performance using activity and attenuation maps derived from PET/CT and MRI data of 25 healthy subjects acquired with a GE Discovery ST. We then use the created maps to generate synthetic data for the GE Discovery ST, the GE Advance NXi, and the Siemens Biograph mCT. The validation was carried out by evaluating Bland‐Altman differences between real and simulated images for each scanner. In addition, SPM voxel‐wise comparison was performed to highlight regional differences. Examples for amyloid PET and for the generation of ground‐truth pathological patients are included. RESULTS: The platform can be efficiently used for generating realistic simulated FDG‐PET images in a reasonable amount of time. The validation showed small differences between SimPET and acquired FDG‐PET images, with errors below 10% for 98.09% (GE Discovery ST), 95.09% (GE Advance NXi), and 91.35% (Siemens Biograph mCT) of the voxels. Nevertheless, our SPM analysis showed significant regional differences between the simulated images and real healthy patients, and thus, the use of the platform for converting control subject databases between different scanners requires further investigation. CONCLUSIONS: The presented platform can potentially allow scientists in clinical and research settings to perform MC simulation experiments without the need for high‐end hardware or advanced computing knowledge and in a reasonable amount of time. John Wiley and Sons Inc. 2021-03-30 2021-05 /pmc/articles/PMC8252452/ /pubmed/33713354 http://dx.doi.org/10.1002/mp.14838 Text en © 2021 The Authors. Medical Physics published by Wiley Periodicals LLC on behalf of American Association of Physicists in Medicine. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle EMERGING IMAGING AND THERAPY MODALITIES
Paredes‐Pacheco, José
López‐González, Francisco Javier
Silva‐Rodríguez, Jesús
Efthimiou, Nikos
Niñerola‐Baizán, Aida
Ruibal, Álvaro
Roé‐Vellvé, Núria
Aguiar, Pablo
SimPET—An open online platform for the Monte Carlo simulation of realistic brain PET data. Validation for (18)F‐FDG scans
title SimPET—An open online platform for the Monte Carlo simulation of realistic brain PET data. Validation for (18)F‐FDG scans
title_full SimPET—An open online platform for the Monte Carlo simulation of realistic brain PET data. Validation for (18)F‐FDG scans
title_fullStr SimPET—An open online platform for the Monte Carlo simulation of realistic brain PET data. Validation for (18)F‐FDG scans
title_full_unstemmed SimPET—An open online platform for the Monte Carlo simulation of realistic brain PET data. Validation for (18)F‐FDG scans
title_short SimPET—An open online platform for the Monte Carlo simulation of realistic brain PET data. Validation for (18)F‐FDG scans
title_sort simpet—an open online platform for the monte carlo simulation of realistic brain pet data. validation for (18)f‐fdg scans
topic EMERGING IMAGING AND THERAPY MODALITIES
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8252452/
https://www.ncbi.nlm.nih.gov/pubmed/33713354
http://dx.doi.org/10.1002/mp.14838
work_keys_str_mv AT paredespachecojose simpetanopenonlineplatformforthemontecarlosimulationofrealisticbrainpetdatavalidationfor18ffdgscans
AT lopezgonzalezfranciscojavier simpetanopenonlineplatformforthemontecarlosimulationofrealisticbrainpetdatavalidationfor18ffdgscans
AT silvarodriguezjesus simpetanopenonlineplatformforthemontecarlosimulationofrealisticbrainpetdatavalidationfor18ffdgscans
AT efthimiounikos simpetanopenonlineplatformforthemontecarlosimulationofrealisticbrainpetdatavalidationfor18ffdgscans
AT ninerolabaizanaida simpetanopenonlineplatformforthemontecarlosimulationofrealisticbrainpetdatavalidationfor18ffdgscans
AT ruibalalvaro simpetanopenonlineplatformforthemontecarlosimulationofrealisticbrainpetdatavalidationfor18ffdgscans
AT roevellvenuria simpetanopenonlineplatformforthemontecarlosimulationofrealisticbrainpetdatavalidationfor18ffdgscans
AT aguiarpablo simpetanopenonlineplatformforthemontecarlosimulationofrealisticbrainpetdatavalidationfor18ffdgscans