Cargando…

DNA Methylation and gene expression patterns are widely altered in fetal growth restriction and associated with FGR development

Fetal growth restriction (FGR) is the failure of the fetus toachieve its genetically determined growth potential, which increasesrisks for a variety of genetic diseases, such as type 2 diabetes mellitus, coronary artery disease, and stroke, during the lifetime. The dysregulation of DNA methylationis...

Descripción completa

Detalles Bibliográficos
Autores principales: Lee, Seoyeong, Kim, Young Nam, Im, DoHwa, Cho, Su Han, Kim, Jiyeon, Kim, Jeong-Hyun, Kim, Kwoneel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8253195/
https://www.ncbi.nlm.nih.gov/pubmed/34262655
http://dx.doi.org/10.1080/19768354.2021.1925741
_version_ 1783717457580523520
author Lee, Seoyeong
Kim, Young Nam
Im, DoHwa
Cho, Su Han
Kim, Jiyeon
Kim, Jeong-Hyun
Kim, Kwoneel
author_facet Lee, Seoyeong
Kim, Young Nam
Im, DoHwa
Cho, Su Han
Kim, Jiyeon
Kim, Jeong-Hyun
Kim, Kwoneel
author_sort Lee, Seoyeong
collection PubMed
description Fetal growth restriction (FGR) is the failure of the fetus toachieve its genetically determined growth potential, which increasesrisks for a variety of genetic diseases, such as type 2 diabetes mellitus, coronary artery disease, and stroke, during the lifetime. The dysregulation of DNA methylationis known to interact with environmental fluctuations, affect gene expressions comprehensively, and be fatal to fetus development in specific cases. Therefore, we set out to find out epigenetic and transcriptomic alterations associated with FGR development. We found a set of differentially expressed genes associated with differentially methylated regions in placentae and cord blood samples. Using dimensional reduction analysis, the expression and methylation variables of the epigenetically altered genes classified the FGR samples from the controls. These genes were also enriched in the biological pathways such as metabolism and developmental processes related to FGR. Furthermore, three genes of INS, MEG3, and ZFP36L2 are implicated in epigenetic imprinting, which has been associated with FGR. These results strongly suggest that DNA methylation is highly dysregulated during FGR development, and abnormal DNA methylation patterns are likely to alter gene expression.
format Online
Article
Text
id pubmed-8253195
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-82531952021-07-13 DNA Methylation and gene expression patterns are widely altered in fetal growth restriction and associated with FGR development Lee, Seoyeong Kim, Young Nam Im, DoHwa Cho, Su Han Kim, Jiyeon Kim, Jeong-Hyun Kim, Kwoneel Anim Cells Syst (Seoul) Omics & Bioinformatics Fetal growth restriction (FGR) is the failure of the fetus toachieve its genetically determined growth potential, which increasesrisks for a variety of genetic diseases, such as type 2 diabetes mellitus, coronary artery disease, and stroke, during the lifetime. The dysregulation of DNA methylationis known to interact with environmental fluctuations, affect gene expressions comprehensively, and be fatal to fetus development in specific cases. Therefore, we set out to find out epigenetic and transcriptomic alterations associated with FGR development. We found a set of differentially expressed genes associated with differentially methylated regions in placentae and cord blood samples. Using dimensional reduction analysis, the expression and methylation variables of the epigenetically altered genes classified the FGR samples from the controls. These genes were also enriched in the biological pathways such as metabolism and developmental processes related to FGR. Furthermore, three genes of INS, MEG3, and ZFP36L2 are implicated in epigenetic imprinting, which has been associated with FGR. These results strongly suggest that DNA methylation is highly dysregulated during FGR development, and abnormal DNA methylation patterns are likely to alter gene expression. Taylor & Francis 2021-05-17 /pmc/articles/PMC8253195/ /pubmed/34262655 http://dx.doi.org/10.1080/19768354.2021.1925741 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Omics & Bioinformatics
Lee, Seoyeong
Kim, Young Nam
Im, DoHwa
Cho, Su Han
Kim, Jiyeon
Kim, Jeong-Hyun
Kim, Kwoneel
DNA Methylation and gene expression patterns are widely altered in fetal growth restriction and associated with FGR development
title DNA Methylation and gene expression patterns are widely altered in fetal growth restriction and associated with FGR development
title_full DNA Methylation and gene expression patterns are widely altered in fetal growth restriction and associated with FGR development
title_fullStr DNA Methylation and gene expression patterns are widely altered in fetal growth restriction and associated with FGR development
title_full_unstemmed DNA Methylation and gene expression patterns are widely altered in fetal growth restriction and associated with FGR development
title_short DNA Methylation and gene expression patterns are widely altered in fetal growth restriction and associated with FGR development
title_sort dna methylation and gene expression patterns are widely altered in fetal growth restriction and associated with fgr development
topic Omics & Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8253195/
https://www.ncbi.nlm.nih.gov/pubmed/34262655
http://dx.doi.org/10.1080/19768354.2021.1925741
work_keys_str_mv AT leeseoyeong dnamethylationandgeneexpressionpatternsarewidelyalteredinfetalgrowthrestrictionandassociatedwithfgrdevelopment
AT kimyoungnam dnamethylationandgeneexpressionpatternsarewidelyalteredinfetalgrowthrestrictionandassociatedwithfgrdevelopment
AT imdohwa dnamethylationandgeneexpressionpatternsarewidelyalteredinfetalgrowthrestrictionandassociatedwithfgrdevelopment
AT chosuhan dnamethylationandgeneexpressionpatternsarewidelyalteredinfetalgrowthrestrictionandassociatedwithfgrdevelopment
AT kimjiyeon dnamethylationandgeneexpressionpatternsarewidelyalteredinfetalgrowthrestrictionandassociatedwithfgrdevelopment
AT kimjeonghyun dnamethylationandgeneexpressionpatternsarewidelyalteredinfetalgrowthrestrictionandassociatedwithfgrdevelopment
AT kimkwoneel dnamethylationandgeneexpressionpatternsarewidelyalteredinfetalgrowthrestrictionandassociatedwithfgrdevelopment