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Clinical use of machine learning‐based pathomics signature for diagnosis and survival prediction of bladder cancer

Traditional histopathology performed by pathologists by the naked eye is insufficient for accurate and efficient diagnosis of bladder cancer (BCa). We collected 643 H&E‐stained BCa images from Shanghai General Hospital and The Cancer Genome Atlas (TCGA). We constructed and cross‐verified automat...

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Autores principales: Chen, Siteng, Jiang, Liren, Zheng, Xinyi, Shao, Jialiang, Wang, Tao, Zhang, Encheng, Gao, Feng, Wang, Xiang, Zheng, Junhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8253293/
https://www.ncbi.nlm.nih.gov/pubmed/33931925
http://dx.doi.org/10.1111/cas.14927
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author Chen, Siteng
Jiang, Liren
Zheng, Xinyi
Shao, Jialiang
Wang, Tao
Zhang, Encheng
Gao, Feng
Wang, Xiang
Zheng, Junhua
author_facet Chen, Siteng
Jiang, Liren
Zheng, Xinyi
Shao, Jialiang
Wang, Tao
Zhang, Encheng
Gao, Feng
Wang, Xiang
Zheng, Junhua
author_sort Chen, Siteng
collection PubMed
description Traditional histopathology performed by pathologists by the naked eye is insufficient for accurate and efficient diagnosis of bladder cancer (BCa). We collected 643 H&E‐stained BCa images from Shanghai General Hospital and The Cancer Genome Atlas (TCGA). We constructed and cross‐verified automatic diagnosis and prognosis models by performing a machine learning algorithm based on pathomics data. Our study indicated that high diagnostic efficiency of the machine learning‐based diagnosis model was observed in patients with BCa, with area under the curve (AUC) values of 96.3%, 89.2%, and 94.1% in the training cohort, test cohort, and external validation cohort, respectively. Our diagnosis model also performed well in distinguishing patients with BCa from patients with glandular cystitis, with an AUC value of 93.4% in the General cohort. Significant differences were found in overall survival in TCGA cohort (hazard ratio (HR) = 2.09, 95% confidence interval (CI): 1.56‐2.81, P < .0001) and the General cohort (HR = 5.32, 95% CI: 2.95‐9.59, P < .0001) comparing patients with BCa of high risk vs low risk stratified by risk score, which was proved to be an independent prognostic factor for BCa. The integration nomogram based on our risk score and clinicopathologic characters displayed higher prediction accuracy than current tumor stage/grade systems, with AUC values of 77.7%, 83.8%, and 81.3% for 1‐, 3‐, and 5‐y overall survival prediction of patients with BCa. However, prospective studies are still needed for further verifications.
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spelling pubmed-82532932021-07-13 Clinical use of machine learning‐based pathomics signature for diagnosis and survival prediction of bladder cancer Chen, Siteng Jiang, Liren Zheng, Xinyi Shao, Jialiang Wang, Tao Zhang, Encheng Gao, Feng Wang, Xiang Zheng, Junhua Cancer Sci Original Articles Traditional histopathology performed by pathologists by the naked eye is insufficient for accurate and efficient diagnosis of bladder cancer (BCa). We collected 643 H&E‐stained BCa images from Shanghai General Hospital and The Cancer Genome Atlas (TCGA). We constructed and cross‐verified automatic diagnosis and prognosis models by performing a machine learning algorithm based on pathomics data. Our study indicated that high diagnostic efficiency of the machine learning‐based diagnosis model was observed in patients with BCa, with area under the curve (AUC) values of 96.3%, 89.2%, and 94.1% in the training cohort, test cohort, and external validation cohort, respectively. Our diagnosis model also performed well in distinguishing patients with BCa from patients with glandular cystitis, with an AUC value of 93.4% in the General cohort. Significant differences were found in overall survival in TCGA cohort (hazard ratio (HR) = 2.09, 95% confidence interval (CI): 1.56‐2.81, P < .0001) and the General cohort (HR = 5.32, 95% CI: 2.95‐9.59, P < .0001) comparing patients with BCa of high risk vs low risk stratified by risk score, which was proved to be an independent prognostic factor for BCa. The integration nomogram based on our risk score and clinicopathologic characters displayed higher prediction accuracy than current tumor stage/grade systems, with AUC values of 77.7%, 83.8%, and 81.3% for 1‐, 3‐, and 5‐y overall survival prediction of patients with BCa. However, prospective studies are still needed for further verifications. John Wiley and Sons Inc. 2021-05-05 2021-07 /pmc/articles/PMC8253293/ /pubmed/33931925 http://dx.doi.org/10.1111/cas.14927 Text en © 2021 The Authors. Cancer Science published by John Wiley & Sons Australia, Ltd on behalf of Japanese Cancer Association. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Articles
Chen, Siteng
Jiang, Liren
Zheng, Xinyi
Shao, Jialiang
Wang, Tao
Zhang, Encheng
Gao, Feng
Wang, Xiang
Zheng, Junhua
Clinical use of machine learning‐based pathomics signature for diagnosis and survival prediction of bladder cancer
title Clinical use of machine learning‐based pathomics signature for diagnosis and survival prediction of bladder cancer
title_full Clinical use of machine learning‐based pathomics signature for diagnosis and survival prediction of bladder cancer
title_fullStr Clinical use of machine learning‐based pathomics signature for diagnosis and survival prediction of bladder cancer
title_full_unstemmed Clinical use of machine learning‐based pathomics signature for diagnosis and survival prediction of bladder cancer
title_short Clinical use of machine learning‐based pathomics signature for diagnosis and survival prediction of bladder cancer
title_sort clinical use of machine learning‐based pathomics signature for diagnosis and survival prediction of bladder cancer
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8253293/
https://www.ncbi.nlm.nih.gov/pubmed/33931925
http://dx.doi.org/10.1111/cas.14927
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