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Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition
Vascular plant one-zinc-finger (VOZ) transcription factors regulate plant growth and development under drought conditions. Six VOZ transcription factors encoding genes exist in soybean genome (both in Glycine max and Glycine soja). Herein, GmVOZs and GsVOZs were identified through in silico analysis...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8253436/ https://www.ncbi.nlm.nih.gov/pubmed/34214130 http://dx.doi.org/10.1371/journal.pone.0253836 |
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author | Rehman, Shoaib Ur Qanmber, Ghulam Tahir, Muhammad Hammad Nadeem Irshad, Ahsan Fiaz, Sajid Ahmad, Furqan Ali, Zulfiqar Sajjad, Muhammad Shees, Muhammad Usman, Muhammad Geng, Zhide |
author_facet | Rehman, Shoaib Ur Qanmber, Ghulam Tahir, Muhammad Hammad Nadeem Irshad, Ahsan Fiaz, Sajid Ahmad, Furqan Ali, Zulfiqar Sajjad, Muhammad Shees, Muhammad Usman, Muhammad Geng, Zhide |
author_sort | Rehman, Shoaib Ur |
collection | PubMed |
description | Vascular plant one-zinc-finger (VOZ) transcription factors regulate plant growth and development under drought conditions. Six VOZ transcription factors encoding genes exist in soybean genome (both in Glycine max and Glycine soja). Herein, GmVOZs and GsVOZs were identified through in silico analysis and characterized with different bioinformatics tools and expression analysis. Phylogenetic analysis classified VOZ genes in four groups. Sequence logos analysis among G. max and G. soja amino acid residues revealed higher conservation. Presence of stress related cis-elements in the upstream regions of GmVOZs and GsVOZs highlights their role in tolerance against abiotic stresses. The collinearity analysis identified 14 paralogous/orthologous gene pairs within and between G. max and G. soja. The Ka/Ks values showed that soybean VOZ genes underwent selection pressure with limited functional deviation arising from whole genome and segmental duplication. The GmVOZs and GsVOZs were found to express in roots and leaves at seedling stage. The qRT-PCR revealed that GmVOZs and GsVOZs transcripts can be regulated by abiotic stresses such as polyethylene glycol (PEG). The findings of this study will provide a reference to decipher physiological and molecular functions of VOZ genes in soybean. |
format | Online Article Text |
id | pubmed-8253436 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-82534362021-07-13 Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition Rehman, Shoaib Ur Qanmber, Ghulam Tahir, Muhammad Hammad Nadeem Irshad, Ahsan Fiaz, Sajid Ahmad, Furqan Ali, Zulfiqar Sajjad, Muhammad Shees, Muhammad Usman, Muhammad Geng, Zhide PLoS One Research Article Vascular plant one-zinc-finger (VOZ) transcription factors regulate plant growth and development under drought conditions. Six VOZ transcription factors encoding genes exist in soybean genome (both in Glycine max and Glycine soja). Herein, GmVOZs and GsVOZs were identified through in silico analysis and characterized with different bioinformatics tools and expression analysis. Phylogenetic analysis classified VOZ genes in four groups. Sequence logos analysis among G. max and G. soja amino acid residues revealed higher conservation. Presence of stress related cis-elements in the upstream regions of GmVOZs and GsVOZs highlights their role in tolerance against abiotic stresses. The collinearity analysis identified 14 paralogous/orthologous gene pairs within and between G. max and G. soja. The Ka/Ks values showed that soybean VOZ genes underwent selection pressure with limited functional deviation arising from whole genome and segmental duplication. The GmVOZs and GsVOZs were found to express in roots and leaves at seedling stage. The qRT-PCR revealed that GmVOZs and GsVOZs transcripts can be regulated by abiotic stresses such as polyethylene glycol (PEG). The findings of this study will provide a reference to decipher physiological and molecular functions of VOZ genes in soybean. Public Library of Science 2021-07-02 /pmc/articles/PMC8253436/ /pubmed/34214130 http://dx.doi.org/10.1371/journal.pone.0253836 Text en © 2021 Rehman et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Rehman, Shoaib Ur Qanmber, Ghulam Tahir, Muhammad Hammad Nadeem Irshad, Ahsan Fiaz, Sajid Ahmad, Furqan Ali, Zulfiqar Sajjad, Muhammad Shees, Muhammad Usman, Muhammad Geng, Zhide Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition |
title | Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition |
title_full | Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition |
title_fullStr | Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition |
title_full_unstemmed | Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition |
title_short | Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition |
title_sort | characterization of vascular plant one-zinc finger (voz) in soybean (glycine max and glycine soja) and their expression analyses under drought condition |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8253436/ https://www.ncbi.nlm.nih.gov/pubmed/34214130 http://dx.doi.org/10.1371/journal.pone.0253836 |
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