Cargando…

Binding patterns of RNA-binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements

Recent reports have revealed that repeat-derived sequences embedded in introns or long noncoding RNAs (lncRNAs) are targets of RNA-binding proteins (RBPs) and contribute to biological processes such as RNA splicing or transcriptional regulation. These findings suggest that repeat-derived RNAs are im...

Descripción completa

Detalles Bibliográficos
Autores principales:	Onoguchi, Masahiro, Zeng, Chao, Matsumaru, Ayako, Hamada, Michiaki
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2021
Materias:	Standard Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8253551/ https://www.ncbi.nlm.nih.gov/pubmed/34235430 http://dx.doi.org/10.1093/nargab/lqab055

Ejemplares similares

Identification and analysis of consensus RNA motifs binding to the genome regulator CTCF
por: Kuang, Shuzhen, et al.
Publicado: (2020)

Cooperativity boosts affinity and specificity of proteins with multiple RNA-binding domains
por: Stitzinger, Simon H, et al.
Publicado: (2023)

Association analysis of repetitive elements and R-loop formation across species
por: Zeng, Chao, et al.
Publicado: (2021)

Pervasive effects of RNA degradation on Nanopore direct RNA sequencing
por: Prawer, Yair D J, et al.
Publicado: (2023)

Conserved structured domains in plant non-coding RNA enod40, their evolution and recruitment of sequences from transposable elements
por: Gultyaev, Alexander P, et al.
Publicado: (2023)

Identification and characterization of RNA pentaloop sequence families
por: Saon, Md Sharear, et al.
Publicado: (2023)

Chlamydia psittaci comparative genomics reveals intraspecies variations in the putative outer membrane and type III secretion system genes
por: Wolff, Bernard J., et al.
Publicado: (2015)

Characterization of novel primary miRNA transcription units in human cells using Bru-seq nascent RNA sequencing
por: Bedi, Karan, et al.
Publicado: (2019)

Transposons contribute to the acquisition of cell type-specific cis-elements in the brain
por: Sekine, Kotaro, et al.
Publicado: (2023)

RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton
por: Raghavan, Venket, et al.
Publicado: (2023)

HIV Vpr protein upregulates microRNA-122 expression and stimulates hepatitis C virus replication
por: Peng, Milin, et al.
Publicado: (2015)

Regulation of mature mRNA levels by RNA processing efficiency
por: Henfrey, Callum, et al.
Publicado: (2023)

A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer
por: Høye, Eirik, et al.
Publicado: (2022)

Differential analysis of binarized single-cell RNA sequencing data captures biological variation
por: Bouland, Gerard A, et al.
Publicado: (2021)

Jonckheere–Terpstra–Kendall-based non-parametric analysis of temporal differential gene expression
por: Iuchi, Hitoshi, et al.
Publicado: (2021)

Clone decomposition based on mutation signatures provides novel insights into mutational processes
por: Matsutani, Taro, et al.
Publicado: (2021)

RNA-NRD: a non-redundant RNA structural dataset for benchmarking and functional analysis
por: Khan, Nabila Shahnaz, et al.
Publicado: (2023)

Identifying sequence features that drive ribosomal association for lncRNA
por: Zeng, Chao, et al.
Publicado: (2018)

A combination of mRNA features influence the efficiency of leaderless mRNA translation initiation
por: Bharmal, Mohammed-Husain M, et al.
Publicado: (2021)

Deep soft K-means clustering with self-training for single-cell RNA sequence data
por: Chen, Liang, et al.
Publicado: (2020)

Taxonomic resolution of the ribosomal RNA operon in bacteria: implications for its use with long-read sequencing
por: de Oliveira Martins, Leonardo, et al.
Publicado: (2019)

Transcriptome sequencing suggests that pre-mRNA splicing counteracts widespread intronic cleavage and polyadenylation
por: Vlasenok, Maria, et al.
Publicado: (2023)

Deep analysis of RNA N(6)-adenosine methylation (m(6)A) patterns in human cells
por: Wang, Jun, et al.
Publicado: (2020)

Delineation of complex gene expression patterns in single cell RNA-seq data with ICARUS v2.0
por: Jiang, Andrew, et al.
Publicado: (2023)

Multi-resBind: a residual network-based multi-label classifier for in vivo RNA binding prediction and preference visualization
por: Zhao, Shitao, et al.
Publicado: (2021)

Dimensionality reduction for single cell RNA sequencing data using constrained robust non-negative matrix factorization
por: Zhang, Shuqin, et al.
Publicado: (2020)

Repeat Detector: versatile sizing of expanded tandem repeats and identification of interrupted alleles from targeted DNA sequencing
por: Taylor, Alysha S, et al.
Publicado: (2022)

Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution
por: Andor, Noemi, et al.
Publicado: (2020)

Predictive modeling of moonlighting DNA-binding proteins
por: Varghese, Dana Mary, et al.
Publicado: (2022)

Machine learning a model for RNA structure prediction
por: Calonaci, Nicola, et al.
Publicado: (2020)

The aesthetics of frieze patterns: Effects of symmetry, motif, and element size
por: Friedenberg, Jay, et al.
Publicado: (2022)

HT-SELEX-based identification of binding pre-miRNA hairpin-motif for small molecules
por: Mukherjee, Sanjukta, et al.
Publicado: (2021)

RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines
por: Zeng, Chao, et al.
Publicado: (2020)

Identification of m(6)A-Associated RNA Binding Proteins Using an Integrative Computational Framework
por: Zhang, Yiqian, et al.
Publicado: (2021)

Alignment of major-groove hydrogen bond arrays uncovers shared information between different DNA sequences that bind the same protein
por: Sedhom, Jacklin, et al.
Publicado: (2022)

A N7-guanine RNA cap methyltransferase signature-sequence as a genetic marker of large genome, non-mammalian Tobaniviridae
por: Ferron, François, et al.
Publicado: (2019)

Generation and network analysis of an RNA-seq transcriptional atlas for the rat
por: Summers, Kim M, et al.
Publicado: (2022)

A map of the SARS-CoV-2 RNA structurome
por: Andrews, Ryan J, et al.
Publicado: (2021)

RNA Binding Protein/RNA Element Interactions and the Control of Translation
por: Pichon, Xavier, et al.
Publicado: (2012)

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences
por: Furió-Tarí, Pedro, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_cs531un4tcijauea6sr008dv26