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Forward and backward locomotion patterns in C. elegans generated by a connectome-based model simulation

Caenorhabditis elegans (C. elegans) can produce various motion patterns despite having only 69 motor neurons and 95 muscle cells. Previous studies successfully elucidate the connectome and role of the respective motor neuron classes related to movement. However, these models have not analyzed the di...

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Autores principales: Sakamoto, Kazuma, Soh, Zu, Suzuki, Michiyo, Iino, Yuichi, Tsuji, Toshio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8253844/
https://www.ncbi.nlm.nih.gov/pubmed/34215774
http://dx.doi.org/10.1038/s41598-021-92690-2
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author Sakamoto, Kazuma
Soh, Zu
Suzuki, Michiyo
Iino, Yuichi
Tsuji, Toshio
author_facet Sakamoto, Kazuma
Soh, Zu
Suzuki, Michiyo
Iino, Yuichi
Tsuji, Toshio
author_sort Sakamoto, Kazuma
collection PubMed
description Caenorhabditis elegans (C. elegans) can produce various motion patterns despite having only 69 motor neurons and 95 muscle cells. Previous studies successfully elucidate the connectome and role of the respective motor neuron classes related to movement. However, these models have not analyzed the distribution of the synaptic and gap connection weights. In this study, we examined whether a motor neuron and muscle network can generate oscillations for both forward and backward movement and analyzed the distribution of the trained synaptic and gap connection weights through a machine learning approach. This paper presents a connectome-based neural network model consisting of motor neurons of classes A, B, D, AS, and muscle, considering both synaptic and gap connections. A supervised learning method called backpropagation through time was adapted to train the connection parameters by feeding teacher data composed of the command neuron input and muscle cell activation. Simulation results confirmed that the motor neuron circuit could generate oscillations with different phase patterns corresponding to forward and backward movement, and could be switched at arbitrary times according to the binary inputs simulating the output of command neurons. Subsequently, we confirmed that the trained synaptic and gap connection weights followed a Boltzmann-type distribution. It should be noted that the proposed model can be trained to reproduce the activity patterns measured for an animal (HRB4 strain). Therefore, the supervised learning approach adopted in this study may allow further analysis of complex activity patterns associated with movements.
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spelling pubmed-82538442021-07-06 Forward and backward locomotion patterns in C. elegans generated by a connectome-based model simulation Sakamoto, Kazuma Soh, Zu Suzuki, Michiyo Iino, Yuichi Tsuji, Toshio Sci Rep Article Caenorhabditis elegans (C. elegans) can produce various motion patterns despite having only 69 motor neurons and 95 muscle cells. Previous studies successfully elucidate the connectome and role of the respective motor neuron classes related to movement. However, these models have not analyzed the distribution of the synaptic and gap connection weights. In this study, we examined whether a motor neuron and muscle network can generate oscillations for both forward and backward movement and analyzed the distribution of the trained synaptic and gap connection weights through a machine learning approach. This paper presents a connectome-based neural network model consisting of motor neurons of classes A, B, D, AS, and muscle, considering both synaptic and gap connections. A supervised learning method called backpropagation through time was adapted to train the connection parameters by feeding teacher data composed of the command neuron input and muscle cell activation. Simulation results confirmed that the motor neuron circuit could generate oscillations with different phase patterns corresponding to forward and backward movement, and could be switched at arbitrary times according to the binary inputs simulating the output of command neurons. Subsequently, we confirmed that the trained synaptic and gap connection weights followed a Boltzmann-type distribution. It should be noted that the proposed model can be trained to reproduce the activity patterns measured for an animal (HRB4 strain). Therefore, the supervised learning approach adopted in this study may allow further analysis of complex activity patterns associated with movements. Nature Publishing Group UK 2021-07-02 /pmc/articles/PMC8253844/ /pubmed/34215774 http://dx.doi.org/10.1038/s41598-021-92690-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sakamoto, Kazuma
Soh, Zu
Suzuki, Michiyo
Iino, Yuichi
Tsuji, Toshio
Forward and backward locomotion patterns in C. elegans generated by a connectome-based model simulation
title Forward and backward locomotion patterns in C. elegans generated by a connectome-based model simulation
title_full Forward and backward locomotion patterns in C. elegans generated by a connectome-based model simulation
title_fullStr Forward and backward locomotion patterns in C. elegans generated by a connectome-based model simulation
title_full_unstemmed Forward and backward locomotion patterns in C. elegans generated by a connectome-based model simulation
title_short Forward and backward locomotion patterns in C. elegans generated by a connectome-based model simulation
title_sort forward and backward locomotion patterns in c. elegans generated by a connectome-based model simulation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8253844/
https://www.ncbi.nlm.nih.gov/pubmed/34215774
http://dx.doi.org/10.1038/s41598-021-92690-2
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