Cargando…

Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms

The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ic...

Descripción completa

Detalles Bibliográficos
Autores principales: Priest, Taylor, Orellana, Luis H., Huettel, Bruno, Fuchs, Bernhard M., Amann, Rudolf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8254474/
https://www.ncbi.nlm.nih.gov/pubmed/34249520
http://dx.doi.org/10.7717/peerj.11721
_version_ 1783717738338844672
author Priest, Taylor
Orellana, Luis H.
Huettel, Bruno
Fuchs, Bernhard M.
Amann, Rudolf
author_facet Priest, Taylor
Orellana, Luis H.
Huettel, Bruno
Fuchs, Bernhard M.
Amann, Rudolf
author_sort Priest, Taylor
collection PubMed
description The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa.
format Online
Article
Text
id pubmed-8254474
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-82544742021-07-08 Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms Priest, Taylor Orellana, Luis H. Huettel, Bruno Fuchs, Bernhard M. Amann, Rudolf PeerJ Bioinformatics The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa. PeerJ Inc. 2021-06-30 /pmc/articles/PMC8254474/ /pubmed/34249520 http://dx.doi.org/10.7717/peerj.11721 Text en ©2021 Priest et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Priest, Taylor
Orellana, Luis H.
Huettel, Bruno
Fuchs, Bernhard M.
Amann, Rudolf
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_full Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_fullStr Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_full_unstemmed Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_short Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_sort microbial metagenome-assembled genomes of the fram strait from short and long read sequencing platforms
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8254474/
https://www.ncbi.nlm.nih.gov/pubmed/34249520
http://dx.doi.org/10.7717/peerj.11721
work_keys_str_mv AT priesttaylor microbialmetagenomeassembledgenomesoftheframstraitfromshortandlongreadsequencingplatforms
AT orellanaluish microbialmetagenomeassembledgenomesoftheframstraitfromshortandlongreadsequencingplatforms
AT huettelbruno microbialmetagenomeassembledgenomesoftheframstraitfromshortandlongreadsequencingplatforms
AT fuchsbernhardm microbialmetagenomeassembledgenomesoftheframstraitfromshortandlongreadsequencingplatforms
AT amannrudolf microbialmetagenomeassembledgenomesoftheframstraitfromshortandlongreadsequencingplatforms