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Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ic...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8254474/ https://www.ncbi.nlm.nih.gov/pubmed/34249520 http://dx.doi.org/10.7717/peerj.11721 |
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author | Priest, Taylor Orellana, Luis H. Huettel, Bruno Fuchs, Bernhard M. Amann, Rudolf |
author_facet | Priest, Taylor Orellana, Luis H. Huettel, Bruno Fuchs, Bernhard M. Amann, Rudolf |
author_sort | Priest, Taylor |
collection | PubMed |
description | The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa. |
format | Online Article Text |
id | pubmed-8254474 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82544742021-07-08 Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms Priest, Taylor Orellana, Luis H. Huettel, Bruno Fuchs, Bernhard M. Amann, Rudolf PeerJ Bioinformatics The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa. PeerJ Inc. 2021-06-30 /pmc/articles/PMC8254474/ /pubmed/34249520 http://dx.doi.org/10.7717/peerj.11721 Text en ©2021 Priest et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Priest, Taylor Orellana, Luis H. Huettel, Bruno Fuchs, Bernhard M. Amann, Rudolf Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title | Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_full | Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_fullStr | Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_full_unstemmed | Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_short | Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_sort | microbial metagenome-assembled genomes of the fram strait from short and long read sequencing platforms |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8254474/ https://www.ncbi.nlm.nih.gov/pubmed/34249520 http://dx.doi.org/10.7717/peerj.11721 |
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