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Deep Learning Models for Gastric Signet Ring Cell Carcinoma Classification in Whole Slide Images

Signet ring cell carcinoma (SRCC) of the stomach is a rare type of cancer with a slowly rising incidence. It tends to be more difficult to detect by pathologists, mainly due to its cellular morphology and diffuse invasion manner, and it has poor prognosis when detected at an advanced stage. Computat...

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Detalles Bibliográficos
Autores principales: Kanavati, Fahdi, Ichihara, Shin, Rambeau, Michael, Iizuka, Osamu, Arihiro, Koji, Tsuneki, Masayuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8258761/
https://www.ncbi.nlm.nih.gov/pubmed/34191660
http://dx.doi.org/10.1177/15330338211027901
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author Kanavati, Fahdi
Ichihara, Shin
Rambeau, Michael
Iizuka, Osamu
Arihiro, Koji
Tsuneki, Masayuki
author_facet Kanavati, Fahdi
Ichihara, Shin
Rambeau, Michael
Iizuka, Osamu
Arihiro, Koji
Tsuneki, Masayuki
author_sort Kanavati, Fahdi
collection PubMed
description Signet ring cell carcinoma (SRCC) of the stomach is a rare type of cancer with a slowly rising incidence. It tends to be more difficult to detect by pathologists, mainly due to its cellular morphology and diffuse invasion manner, and it has poor prognosis when detected at an advanced stage. Computational pathology tools that can assist pathologists in detecting SRCC would be of a massive benefit. In this paper, we trained deep learning models using transfer learning, fully-supervised learning, and weakly-supervised learning to predict SRCC in Whole Slide Images (WSIs) using a training set of 1,765 WSIs. We evaluated the models on two different test sets (n = 999, n = 455). The best model achieved a ROC-AUC of at least 0.99 on all two test sets, setting a top baseline performance for SRCC WSI classification.
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spelling pubmed-82587612021-07-16 Deep Learning Models for Gastric Signet Ring Cell Carcinoma Classification in Whole Slide Images Kanavati, Fahdi Ichihara, Shin Rambeau, Michael Iizuka, Osamu Arihiro, Koji Tsuneki, Masayuki Technol Cancer Res Treat Original Article Signet ring cell carcinoma (SRCC) of the stomach is a rare type of cancer with a slowly rising incidence. It tends to be more difficult to detect by pathologists, mainly due to its cellular morphology and diffuse invasion manner, and it has poor prognosis when detected at an advanced stage. Computational pathology tools that can assist pathologists in detecting SRCC would be of a massive benefit. In this paper, we trained deep learning models using transfer learning, fully-supervised learning, and weakly-supervised learning to predict SRCC in Whole Slide Images (WSIs) using a training set of 1,765 WSIs. We evaluated the models on two different test sets (n = 999, n = 455). The best model achieved a ROC-AUC of at least 0.99 on all two test sets, setting a top baseline performance for SRCC WSI classification. SAGE Publications 2021-06-30 /pmc/articles/PMC8258761/ /pubmed/34191660 http://dx.doi.org/10.1177/15330338211027901 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Article
Kanavati, Fahdi
Ichihara, Shin
Rambeau, Michael
Iizuka, Osamu
Arihiro, Koji
Tsuneki, Masayuki
Deep Learning Models for Gastric Signet Ring Cell Carcinoma Classification in Whole Slide Images
title Deep Learning Models for Gastric Signet Ring Cell Carcinoma Classification in Whole Slide Images
title_full Deep Learning Models for Gastric Signet Ring Cell Carcinoma Classification in Whole Slide Images
title_fullStr Deep Learning Models for Gastric Signet Ring Cell Carcinoma Classification in Whole Slide Images
title_full_unstemmed Deep Learning Models for Gastric Signet Ring Cell Carcinoma Classification in Whole Slide Images
title_short Deep Learning Models for Gastric Signet Ring Cell Carcinoma Classification in Whole Slide Images
title_sort deep learning models for gastric signet ring cell carcinoma classification in whole slide images
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8258761/
https://www.ncbi.nlm.nih.gov/pubmed/34191660
http://dx.doi.org/10.1177/15330338211027901
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