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A hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods

The phototransduction cascade is paradigmatic for signaling pathways initiated by G protein-coupled receptors and is characterized by a fine regulation of photoreceptor sensitivity and electrical response to a broad range of light stimuli. Here, we present a biochemically comprehensive model of phot...

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Autores principales: Beelen, Charlotte Johanna, Asteriti, Sabrina, Cangiano, Lorenzo, Koch, Karl-Wilhelm, Dell'Orco, Daniele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8258797/
https://www.ncbi.nlm.nih.gov/pubmed/34285774
http://dx.doi.org/10.1016/j.csbj.2021.06.033
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author Beelen, Charlotte Johanna
Asteriti, Sabrina
Cangiano, Lorenzo
Koch, Karl-Wilhelm
Dell'Orco, Daniele
author_facet Beelen, Charlotte Johanna
Asteriti, Sabrina
Cangiano, Lorenzo
Koch, Karl-Wilhelm
Dell'Orco, Daniele
author_sort Beelen, Charlotte Johanna
collection PubMed
description The phototransduction cascade is paradigmatic for signaling pathways initiated by G protein-coupled receptors and is characterized by a fine regulation of photoreceptor sensitivity and electrical response to a broad range of light stimuli. Here, we present a biochemically comprehensive model of phototransduction in mouse rods based on a hybrid stochastic and deterministic mathematical framework, and a quantitatively accurate description of the rod impedance in the dark. The latter, combined with novel patch clamp recordings from rod outer segments, enables the interconversion of dim flash responses between photovoltage and photocurrent and thus direct comparison with the simulations. The model reproduces the salient features of the experimental photoresponses at very dim and bright stimuli, for both normal photoreceptors and those with genetically modified cascade components. Our modelling approach recapitulates a number of recent findings in vertebrate phototransduction. First, our results are in line with the recently established requirement of dimeric activation of PDE6 by transducin and further show that such conditions can be fulfilled at the expense of a significant excess of G protein activated by rhodopsin. Secondly, simulations suggest a crucial role of the recoverin-mediated Ca(2+)-feedback on rhodopsin kinase in accelerating the shutoff, when light flashes are delivered in the presence of a light background. Finally, stochastic simulations suggest that transient complexes between dark rhodopsin and transducin formed prior to light stimulation increase the reproducibility of single photon responses. Current limitations of the model are likely associated with the yet unknown mechanisms governing the shutoff of the cascade.
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spelling pubmed-82587972021-07-19 A hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods Beelen, Charlotte Johanna Asteriti, Sabrina Cangiano, Lorenzo Koch, Karl-Wilhelm Dell'Orco, Daniele Comput Struct Biotechnol J Research Article The phototransduction cascade is paradigmatic for signaling pathways initiated by G protein-coupled receptors and is characterized by a fine regulation of photoreceptor sensitivity and electrical response to a broad range of light stimuli. Here, we present a biochemically comprehensive model of phototransduction in mouse rods based on a hybrid stochastic and deterministic mathematical framework, and a quantitatively accurate description of the rod impedance in the dark. The latter, combined with novel patch clamp recordings from rod outer segments, enables the interconversion of dim flash responses between photovoltage and photocurrent and thus direct comparison with the simulations. The model reproduces the salient features of the experimental photoresponses at very dim and bright stimuli, for both normal photoreceptors and those with genetically modified cascade components. Our modelling approach recapitulates a number of recent findings in vertebrate phototransduction. First, our results are in line with the recently established requirement of dimeric activation of PDE6 by transducin and further show that such conditions can be fulfilled at the expense of a significant excess of G protein activated by rhodopsin. Secondly, simulations suggest a crucial role of the recoverin-mediated Ca(2+)-feedback on rhodopsin kinase in accelerating the shutoff, when light flashes are delivered in the presence of a light background. Finally, stochastic simulations suggest that transient complexes between dark rhodopsin and transducin formed prior to light stimulation increase the reproducibility of single photon responses. Current limitations of the model are likely associated with the yet unknown mechanisms governing the shutoff of the cascade. Research Network of Computational and Structural Biotechnology 2021-06-23 /pmc/articles/PMC8258797/ /pubmed/34285774 http://dx.doi.org/10.1016/j.csbj.2021.06.033 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Beelen, Charlotte Johanna
Asteriti, Sabrina
Cangiano, Lorenzo
Koch, Karl-Wilhelm
Dell'Orco, Daniele
A hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods
title A hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods
title_full A hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods
title_fullStr A hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods
title_full_unstemmed A hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods
title_short A hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods
title_sort hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8258797/
https://www.ncbi.nlm.nih.gov/pubmed/34285774
http://dx.doi.org/10.1016/j.csbj.2021.06.033
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