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Complete mitochondrial genome of Coleophora therinella Tengström, 1848 (Lepidoptera: Coleophoridae)

The mitochondrial genome (mitogenome) of Coleophora therinella Tengström, 1848 is the first report for the family Coleophoridae in Lepidoptera. The 15,539-bp long complete genome has an arrangement identical to that observed in most lepidopteran genomes. COI had the atypical CGA codon that is freque...

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Autores principales: Park, Jeong Sun, Kim, Min Jee, Kim, Sung- Soo, Kim, Iksoo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8259821/
https://www.ncbi.nlm.nih.gov/pubmed/34263038
http://dx.doi.org/10.1080/23802359.2021.1944387
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author Park, Jeong Sun
Kim, Min Jee
Kim, Sung- Soo
Kim, Iksoo
author_facet Park, Jeong Sun
Kim, Min Jee
Kim, Sung- Soo
Kim, Iksoo
author_sort Park, Jeong Sun
collection PubMed
description The mitochondrial genome (mitogenome) of Coleophora therinella Tengström, 1848 is the first report for the family Coleophoridae in Lepidoptera. The 15,539-bp long complete genome has an arrangement identical to that observed in most lepidopteran genomes. COI had the atypical CGA codon that is frequently found in the start region of the lepidopteran COI, and COII had the GTG codon found previously in Drosophila yakuba ND5 and Rattus norvegicus ND1. The 457-bp long A + T-rich region was the second largest, next to Blastobasis lacticolella, which belongs to Blastobasidae in the superfamily Gelechioidea. The A/T content of the whole mitogenome was 80.7%; however, it varied among the regions/genes as follows: A + T-rich region, 94.8%; srRNA, 85.0%; lrRNA, 84.3%; tRNAs, 81.5%; and PCGs, 78.9%. Phylogenetic analyses with concatenated sequences of the 13 PCGs and two RNA genes using the maximum likelihood method, placed Coleophoridae, represented only by C. therinella, as the most basal lineage of the Gelechioidea families consisted of Stathmopodidae, Scythrididae, Blastobasidae, Autostichidae, and Oecophoridae, but nodal support for this grouping was very low (27%). Currently, several families of Gelechioidea are represented by a single species. Thus, extended sampling is required for further reasonable inference for the relationships of these families.
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spelling pubmed-82598212021-07-13 Complete mitochondrial genome of Coleophora therinella Tengström, 1848 (Lepidoptera: Coleophoridae) Park, Jeong Sun Kim, Min Jee Kim, Sung- Soo Kim, Iksoo Mitochondrial DNA B Resour Mitogenome Announcement The mitochondrial genome (mitogenome) of Coleophora therinella Tengström, 1848 is the first report for the family Coleophoridae in Lepidoptera. The 15,539-bp long complete genome has an arrangement identical to that observed in most lepidopteran genomes. COI had the atypical CGA codon that is frequently found in the start region of the lepidopteran COI, and COII had the GTG codon found previously in Drosophila yakuba ND5 and Rattus norvegicus ND1. The 457-bp long A + T-rich region was the second largest, next to Blastobasis lacticolella, which belongs to Blastobasidae in the superfamily Gelechioidea. The A/T content of the whole mitogenome was 80.7%; however, it varied among the regions/genes as follows: A + T-rich region, 94.8%; srRNA, 85.0%; lrRNA, 84.3%; tRNAs, 81.5%; and PCGs, 78.9%. Phylogenetic analyses with concatenated sequences of the 13 PCGs and two RNA genes using the maximum likelihood method, placed Coleophoridae, represented only by C. therinella, as the most basal lineage of the Gelechioidea families consisted of Stathmopodidae, Scythrididae, Blastobasidae, Autostichidae, and Oecophoridae, but nodal support for this grouping was very low (27%). Currently, several families of Gelechioidea are represented by a single species. Thus, extended sampling is required for further reasonable inference for the relationships of these families. Taylor & Francis 2021-07-02 /pmc/articles/PMC8259821/ /pubmed/34263038 http://dx.doi.org/10.1080/23802359.2021.1944387 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Park, Jeong Sun
Kim, Min Jee
Kim, Sung- Soo
Kim, Iksoo
Complete mitochondrial genome of Coleophora therinella Tengström, 1848 (Lepidoptera: Coleophoridae)
title Complete mitochondrial genome of Coleophora therinella Tengström, 1848 (Lepidoptera: Coleophoridae)
title_full Complete mitochondrial genome of Coleophora therinella Tengström, 1848 (Lepidoptera: Coleophoridae)
title_fullStr Complete mitochondrial genome of Coleophora therinella Tengström, 1848 (Lepidoptera: Coleophoridae)
title_full_unstemmed Complete mitochondrial genome of Coleophora therinella Tengström, 1848 (Lepidoptera: Coleophoridae)
title_short Complete mitochondrial genome of Coleophora therinella Tengström, 1848 (Lepidoptera: Coleophoridae)
title_sort complete mitochondrial genome of coleophora therinella tengström, 1848 (lepidoptera: coleophoridae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8259821/
https://www.ncbi.nlm.nih.gov/pubmed/34263038
http://dx.doi.org/10.1080/23802359.2021.1944387
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