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Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound
An endolichenic fungus, Xylaria grammica strain EL000614, showed strong nematicidal effects against plant pathogenic nematode, Meloidogyne incognita by producing grammicin. We report genome assembly of X. grammica EL000614 comprised of 25 scaffolds with a total length of 54.73 Mb, N50 of 4.60 Mb, an...
| Autores principales: | , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Taylor & Francis
2021
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8259839/ https://www.ncbi.nlm.nih.gov/pubmed/34290553 http://dx.doi.org/10.1080/12298093.2021.1914360 |
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| author | Park, Sook-Young Jeon, Jongbum Kim, Jung A Jeon, Mi Jin Yu, Nan Hee Kim, Seulbi Park, Ae Ran Kim, Jin-Cheol Lee, Yerim Kim, Youngmin Choi, Eu Ddeum Jeong, Min-Hye Lee, Yong-Hwan Kim, Soonok |
| author_facet | Park, Sook-Young Jeon, Jongbum Kim, Jung A Jeon, Mi Jin Yu, Nan Hee Kim, Seulbi Park, Ae Ran Kim, Jin-Cheol Lee, Yerim Kim, Youngmin Choi, Eu Ddeum Jeong, Min-Hye Lee, Yong-Hwan Kim, Soonok |
| author_sort | Park, Sook-Young |
| collection | PubMed |
| description | An endolichenic fungus, Xylaria grammica strain EL000614, showed strong nematicidal effects against plant pathogenic nematode, Meloidogyne incognita by producing grammicin. We report genome assembly of X. grammica EL000614 comprised of 25 scaffolds with a total length of 54.73 Mb, N50 of 4.60 Mb, and 99.8% of BUSCO completeness. GC contents of this genome were 44.02%. Gene families associated with biosynthesis of secondary metabolites or regulatory proteins were identified out of 13,730 gene models predicted. |
| format | Online Article Text |
| id | pubmed-8259839 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2021 |
| publisher | Taylor & Francis |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-82598392021-07-20 Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound Park, Sook-Young Jeon, Jongbum Kim, Jung A Jeon, Mi Jin Yu, Nan Hee Kim, Seulbi Park, Ae Ran Kim, Jin-Cheol Lee, Yerim Kim, Youngmin Choi, Eu Ddeum Jeong, Min-Hye Lee, Yong-Hwan Kim, Soonok Mycobiology Research Notes An endolichenic fungus, Xylaria grammica strain EL000614, showed strong nematicidal effects against plant pathogenic nematode, Meloidogyne incognita by producing grammicin. We report genome assembly of X. grammica EL000614 comprised of 25 scaffolds with a total length of 54.73 Mb, N50 of 4.60 Mb, and 99.8% of BUSCO completeness. GC contents of this genome were 44.02%. Gene families associated with biosynthesis of secondary metabolites or regulatory proteins were identified out of 13,730 gene models predicted. Taylor & Francis 2021-04-28 /pmc/articles/PMC8259839/ /pubmed/34290553 http://dx.doi.org/10.1080/12298093.2021.1914360 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group on behalf of the Korean Society of Mycology. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Research Notes Park, Sook-Young Jeon, Jongbum Kim, Jung A Jeon, Mi Jin Yu, Nan Hee Kim, Seulbi Park, Ae Ran Kim, Jin-Cheol Lee, Yerim Kim, Youngmin Choi, Eu Ddeum Jeong, Min-Hye Lee, Yong-Hwan Kim, Soonok Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound |
| title | Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound |
| title_full | Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound |
| title_fullStr | Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound |
| title_full_unstemmed | Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound |
| title_short | Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound |
| title_sort | draft genome sequence of xylaria grammica el000614, a strain producing grammicin, a potent nematicidal compound |
| topic | Research Notes |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8259839/ https://www.ncbi.nlm.nih.gov/pubmed/34290553 http://dx.doi.org/10.1080/12298093.2021.1914360 |
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