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Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver

PURPOSE: Registration of Laparoscopic Ultrasound (LUS) to a pre-operative scan such as Computed Tomography (CT) using blood vessel information has been proposed as a method to enable image-guidance for laparoscopic liver resection. Currently, there are solutions for this problem that can potentially...

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Autores principales: Montaña-Brown, Nina, Ramalhinho, João, Allam, Moustafa, Davidson, Brian, Hu, Yipeng, Clarkson, Matthew J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8260404/
https://www.ncbi.nlm.nih.gov/pubmed/34046826
http://dx.doi.org/10.1007/s11548-021-02400-6
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author Montaña-Brown, Nina
Ramalhinho, João
Allam, Moustafa
Davidson, Brian
Hu, Yipeng
Clarkson, Matthew J.
author_facet Montaña-Brown, Nina
Ramalhinho, João
Allam, Moustafa
Davidson, Brian
Hu, Yipeng
Clarkson, Matthew J.
author_sort Montaña-Brown, Nina
collection PubMed
description PURPOSE: Registration of Laparoscopic Ultrasound (LUS) to a pre-operative scan such as Computed Tomography (CT) using blood vessel information has been proposed as a method to enable image-guidance for laparoscopic liver resection. Currently, there are solutions for this problem that can potentially enable clinical translation by bypassing the need for a manual initialisation and tracking information. However, no reliable framework for the segmentation of vessels in 2D untracked LUS images has been presented. METHODS: We propose the use of 2D UNet for the segmentation of liver vessels in 2D LUS images. We integrate these results in a previously developed registration method, and show the feasibility of a fully automatic initialisation to the LUS to CT registration problem without a tracking device. RESULTS: We validate our segmentation using LUS data from 6 patients. We test multiple models by placing patient datasets into different combinations of training, testing and hold-out, and obtain mean Dice scores ranging from 0.543 to 0.706. Using these segmentations, we obtain registration accuracies between 6.3 and 16.6 mm in 50% of cases. CONCLUSIONS: We demonstrate the first instance of deep learning (DL) for the segmentation of liver vessels in LUS. Our results show the feasibility of UNet in detecting multiple vessel instances in 2D LUS images, and potentially automating a LUS to CT registration pipeline.
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spelling pubmed-82604042021-07-20 Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver Montaña-Brown, Nina Ramalhinho, João Allam, Moustafa Davidson, Brian Hu, Yipeng Clarkson, Matthew J. Int J Comput Assist Radiol Surg Original Article PURPOSE: Registration of Laparoscopic Ultrasound (LUS) to a pre-operative scan such as Computed Tomography (CT) using blood vessel information has been proposed as a method to enable image-guidance for laparoscopic liver resection. Currently, there are solutions for this problem that can potentially enable clinical translation by bypassing the need for a manual initialisation and tracking information. However, no reliable framework for the segmentation of vessels in 2D untracked LUS images has been presented. METHODS: We propose the use of 2D UNet for the segmentation of liver vessels in 2D LUS images. We integrate these results in a previously developed registration method, and show the feasibility of a fully automatic initialisation to the LUS to CT registration problem without a tracking device. RESULTS: We validate our segmentation using LUS data from 6 patients. We test multiple models by placing patient datasets into different combinations of training, testing and hold-out, and obtain mean Dice scores ranging from 0.543 to 0.706. Using these segmentations, we obtain registration accuracies between 6.3 and 16.6 mm in 50% of cases. CONCLUSIONS: We demonstrate the first instance of deep learning (DL) for the segmentation of liver vessels in LUS. Our results show the feasibility of UNet in detecting multiple vessel instances in 2D LUS images, and potentially automating a LUS to CT registration pipeline. Springer International Publishing 2021-05-27 2021 /pmc/articles/PMC8260404/ /pubmed/34046826 http://dx.doi.org/10.1007/s11548-021-02400-6 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Montaña-Brown, Nina
Ramalhinho, João
Allam, Moustafa
Davidson, Brian
Hu, Yipeng
Clarkson, Matthew J.
Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver
title Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver
title_full Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver
title_fullStr Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver
title_full_unstemmed Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver
title_short Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver
title_sort vessel segmentation for automatic registration of untracked laparoscopic ultrasound to ct of the liver
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8260404/
https://www.ncbi.nlm.nih.gov/pubmed/34046826
http://dx.doi.org/10.1007/s11548-021-02400-6
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