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iNetModels 2.0: an interactive visualization and database of multi-omics data

It is essential to reveal the associations between various omics data for a comprehensive understanding of the altered biological process in human wellness and disease. To date, very few studies have focused on collecting and exhibiting multi-omics associations in a single database. Here, we present...

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Autores principales: Arif, Muhammad, Zhang, Cheng, Li, Xiangyu, Güngör, Cem, Çakmak, Buğra, Arslantürk, Metin, Tebani, Abdellah, Özcan, Berkay, Subaş, Oğuzhan, Zhou, Wenyu, Piening, Brian, Turkez, Hasan, Fagerberg, Linn, Price, Nathan, Hood, Leroy, Snyder, Michael, Nielsen, Jens, Uhlen, Mathias, Mardinoglu, Adil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8262747/
https://www.ncbi.nlm.nih.gov/pubmed/33849075
http://dx.doi.org/10.1093/nar/gkab254
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author Arif, Muhammad
Zhang, Cheng
Li, Xiangyu
Güngör, Cem
Çakmak, Buğra
Arslantürk, Metin
Tebani, Abdellah
Özcan, Berkay
Subaş, Oğuzhan
Zhou, Wenyu
Piening, Brian
Turkez, Hasan
Fagerberg, Linn
Price, Nathan
Hood, Leroy
Snyder, Michael
Nielsen, Jens
Uhlen, Mathias
Mardinoglu, Adil
author_facet Arif, Muhammad
Zhang, Cheng
Li, Xiangyu
Güngör, Cem
Çakmak, Buğra
Arslantürk, Metin
Tebani, Abdellah
Özcan, Berkay
Subaş, Oğuzhan
Zhou, Wenyu
Piening, Brian
Turkez, Hasan
Fagerberg, Linn
Price, Nathan
Hood, Leroy
Snyder, Michael
Nielsen, Jens
Uhlen, Mathias
Mardinoglu, Adil
author_sort Arif, Muhammad
collection PubMed
description It is essential to reveal the associations between various omics data for a comprehensive understanding of the altered biological process in human wellness and disease. To date, very few studies have focused on collecting and exhibiting multi-omics associations in a single database. Here, we present iNetModels, an interactive database and visualization platform of Multi-Omics Biological Networks (MOBNs). This platform describes the associations between the clinical chemistry, anthropometric parameters, plasma proteomics, plasma metabolomics, as well as metagenomics for oral and gut microbiome obtained from the same individuals. Moreover, iNetModels includes tissue- and cancer-specific Gene Co-expression Networks (GCNs) for exploring the connections between the specific genes. This platform allows the user to interactively explore a single feature's association with other omics data and customize its particular context (e.g. male/female specific). The users can also register their data for sharing and visualization of the MOBNs and GCNs. Moreover, iNetModels allows users who do not have a bioinformatics background to facilitate human wellness and disease research. iNetModels can be accessed freely at https://inetmodels.com without any limitation.
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spelling pubmed-82627472021-07-08 iNetModels 2.0: an interactive visualization and database of multi-omics data Arif, Muhammad Zhang, Cheng Li, Xiangyu Güngör, Cem Çakmak, Buğra Arslantürk, Metin Tebani, Abdellah Özcan, Berkay Subaş, Oğuzhan Zhou, Wenyu Piening, Brian Turkez, Hasan Fagerberg, Linn Price, Nathan Hood, Leroy Snyder, Michael Nielsen, Jens Uhlen, Mathias Mardinoglu, Adil Nucleic Acids Res Web Server Issue It is essential to reveal the associations between various omics data for a comprehensive understanding of the altered biological process in human wellness and disease. To date, very few studies have focused on collecting and exhibiting multi-omics associations in a single database. Here, we present iNetModels, an interactive database and visualization platform of Multi-Omics Biological Networks (MOBNs). This platform describes the associations between the clinical chemistry, anthropometric parameters, plasma proteomics, plasma metabolomics, as well as metagenomics for oral and gut microbiome obtained from the same individuals. Moreover, iNetModels includes tissue- and cancer-specific Gene Co-expression Networks (GCNs) for exploring the connections between the specific genes. This platform allows the user to interactively explore a single feature's association with other omics data and customize its particular context (e.g. male/female specific). The users can also register their data for sharing and visualization of the MOBNs and GCNs. Moreover, iNetModels allows users who do not have a bioinformatics background to facilitate human wellness and disease research. iNetModels can be accessed freely at https://inetmodels.com without any limitation. Oxford University Press 2021-04-13 /pmc/articles/PMC8262747/ /pubmed/33849075 http://dx.doi.org/10.1093/nar/gkab254 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server Issue
Arif, Muhammad
Zhang, Cheng
Li, Xiangyu
Güngör, Cem
Çakmak, Buğra
Arslantürk, Metin
Tebani, Abdellah
Özcan, Berkay
Subaş, Oğuzhan
Zhou, Wenyu
Piening, Brian
Turkez, Hasan
Fagerberg, Linn
Price, Nathan
Hood, Leroy
Snyder, Michael
Nielsen, Jens
Uhlen, Mathias
Mardinoglu, Adil
iNetModels 2.0: an interactive visualization and database of multi-omics data
title iNetModels 2.0: an interactive visualization and database of multi-omics data
title_full iNetModels 2.0: an interactive visualization and database of multi-omics data
title_fullStr iNetModels 2.0: an interactive visualization and database of multi-omics data
title_full_unstemmed iNetModels 2.0: an interactive visualization and database of multi-omics data
title_short iNetModels 2.0: an interactive visualization and database of multi-omics data
title_sort inetmodels 2.0: an interactive visualization and database of multi-omics data
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8262747/
https://www.ncbi.nlm.nih.gov/pubmed/33849075
http://dx.doi.org/10.1093/nar/gkab254
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