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antiSMASH 6.0: improving cluster detection and comparison capabilities

Many microorganisms produce natural products that form the basis of antimicrobials, antivirals, and other drugs. Genome mining is routinely used to complement screening-based workflows to discover novel natural products. Since 2011, the "antibiotics and secondary metabolite analysis shell—antiS...

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Autores principales: Blin, Kai, Shaw, Simon, Kloosterman, Alexander M, Charlop-Powers, Zach, van Wezel, Gilles P, Medema, Marnix H, Weber, Tilmann
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8262755/
https://www.ncbi.nlm.nih.gov/pubmed/33978755
http://dx.doi.org/10.1093/nar/gkab335
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author Blin, Kai
Shaw, Simon
Kloosterman, Alexander M
Charlop-Powers, Zach
van Wezel, Gilles P
Medema, Marnix H
Weber, Tilmann
author_facet Blin, Kai
Shaw, Simon
Kloosterman, Alexander M
Charlop-Powers, Zach
van Wezel, Gilles P
Medema, Marnix H
Weber, Tilmann
author_sort Blin, Kai
collection PubMed
description Many microorganisms produce natural products that form the basis of antimicrobials, antivirals, and other drugs. Genome mining is routinely used to complement screening-based workflows to discover novel natural products. Since 2011, the "antibiotics and secondary metabolite analysis shell—antiSMASH" (https://antismash.secondarymetabolites.org/) has supported researchers in their microbial genome mining tasks, both as a free-to-use web server and as a standalone tool under an OSI-approved open-source license. It is currently the most widely used tool for detecting and characterising biosynthetic gene clusters (BGCs) in bacteria and fungi. Here, we present the updated version 6 of antiSMASH. antiSMASH 6 increases the number of supported cluster types from 58 to 71, displays the modular structure of multi-modular BGCs, adds a new BGC comparison algorithm, allows for the integration of results from other prediction tools, and more effectively detects tailoring enzymes in RiPP clusters.
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spelling pubmed-82627552021-07-08 antiSMASH 6.0: improving cluster detection and comparison capabilities Blin, Kai Shaw, Simon Kloosterman, Alexander M Charlop-Powers, Zach van Wezel, Gilles P Medema, Marnix H Weber, Tilmann Nucleic Acids Res Web Server Issue Many microorganisms produce natural products that form the basis of antimicrobials, antivirals, and other drugs. Genome mining is routinely used to complement screening-based workflows to discover novel natural products. Since 2011, the "antibiotics and secondary metabolite analysis shell—antiSMASH" (https://antismash.secondarymetabolites.org/) has supported researchers in their microbial genome mining tasks, both as a free-to-use web server and as a standalone tool under an OSI-approved open-source license. It is currently the most widely used tool for detecting and characterising biosynthetic gene clusters (BGCs) in bacteria and fungi. Here, we present the updated version 6 of antiSMASH. antiSMASH 6 increases the number of supported cluster types from 58 to 71, displays the modular structure of multi-modular BGCs, adds a new BGC comparison algorithm, allows for the integration of results from other prediction tools, and more effectively detects tailoring enzymes in RiPP clusters. Oxford University Press 2021-05-12 /pmc/articles/PMC8262755/ /pubmed/33978755 http://dx.doi.org/10.1093/nar/gkab335 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server Issue
Blin, Kai
Shaw, Simon
Kloosterman, Alexander M
Charlop-Powers, Zach
van Wezel, Gilles P
Medema, Marnix H
Weber, Tilmann
antiSMASH 6.0: improving cluster detection and comparison capabilities
title antiSMASH 6.0: improving cluster detection and comparison capabilities
title_full antiSMASH 6.0: improving cluster detection and comparison capabilities
title_fullStr antiSMASH 6.0: improving cluster detection and comparison capabilities
title_full_unstemmed antiSMASH 6.0: improving cluster detection and comparison capabilities
title_short antiSMASH 6.0: improving cluster detection and comparison capabilities
title_sort antismash 6.0: improving cluster detection and comparison capabilities
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8262755/
https://www.ncbi.nlm.nih.gov/pubmed/33978755
http://dx.doi.org/10.1093/nar/gkab335
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