Cargando…

BRIO: a web server for RNA sequence and structure motif scan

The interaction between RNA and RNA-binding proteins (RBPs) has a key role in the regulation of gene expression, in RNA stability, and in many other biological processes. RBPs accomplish these functions by binding target RNA molecules through specific sequence and structure motifs. The identificatio...

Descripción completa

Detalles Bibliográficos
Autores principales:	Guarracino, Andrea, Pepe, Gerardo, Ballesio, Francesco, Adinolfi, Marta, Pietrosanto, Marco, Sangiovanni, Elisa, Vitale, Ilio, Ausiello, Gabriele, Helmer-Citterich, Manuela
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2021
Materias:	Web Server Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8262756/ https://www.ncbi.nlm.nih.gov/pubmed/34038531 http://dx.doi.org/10.1093/nar/gkab400

Ejemplares similares

Web-Beagle: a web server for the alignment of RNA secondary structures
por: Mattei, Eugenio, et al.
Publicado: (2015)

BEAM web server: a tool for structural RNA motif discovery
por: Pietrosanto, Marco, et al.
Publicado: (2018)

Relative Information Gain: Shannon entropy-based measure of the relative structural conservation in RNA alignments
por: Pietrosanto, Marco, et al.
Publicado: (2021)

ScanMoment: a web server for combinatorial analysis of basic residues in nucleic acid binding sites
por: Massey, Steven E
Publicado: (2009)

WebFARM: web server for finite automated restriction mapping
por: Singh, Tiratha Raj
Publicado: (2010)

IWS: Integrated web server for protein sequence and structure analysis
por: Shameer, Khader, et al.
Publicado: (2007)

A web server for transcription factor binding site prediction
por: Su, Gang, et al.
Publicado: (2006)

ESBRI: A web server for evaluating salt bridges in proteins
por: Costantini, Susan, et al.
Publicado: (2008)

RICHEST ‐ a web server for richness estimation in biological data
por: Durden, Chris, et al.
Publicado: (2009)

The BaMM web server for de-novo motif discovery and regulatory sequence analysis
por: Kiesel, Anja, et al.
Publicado: (2018)

StarScan: a web server for scanning small RNA targets from degradome sequencing data
por: Liu, Shun, et al.
Publicado: (2015)

LSAT: Liliaceae Simple Sequences Analysis Tool, a web server
por: Biswas, Manosh Kumar, et al.
Publicado: (2018)

JUZBOX: A web server for extracting biomedical words from the protein sequence
por: Bobby, Paul, et al.
Publicado: (2009)

APPRIS WebServer and WebServices
por: Rodriguez, Jose Manuel, et al.
Publicado: (2015)

LIPPRED: A web server for accurate prediction of lipoprotein signal sequences and cleavage sites
por: Taylor, Paul D, et al.
Publicado: (2006)

The microarray manual curation tool (MMCT): A Web server for microarray probe evaluations
por: Tulpan, Dan, et al.
Publicado: (2010)

CFP: a webserver for constructing sequencebased protein conformational flexibility profiles
por: Kuznetsov, Igor B, et al.
Publicado: (2009)

Discovering sequence and structure landscapes in RNA interaction motifs
por: Adinolfi, Marta, et al.
Publicado: (2019)

FlexPred: a web-server for predicting residue positions involved in conformational switches in proteins
por: Kuznetsov, Igor B, et al.
Publicado: (2008)

PIMA: Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization
por: Kaleeckal Mathew, Oommen, et al.
Publicado: (2016)

Ori-Finder 2022: A Comprehensive Web Server for Prediction and Analysis of Bacterial Replication Origins
por: Dong, Mei-Jing, et al.
Publicado: (2022)

RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps
por: Drory Retwitzer, Matan, et al.
Publicado: (2015)

D-MATRIX: A web tool for constructing weight matrix of conserved DNA motifs
por: Sen, Naresh, et al.
Publicado: (2009)

PICI: A web server with a multi-parametric algorithm for identifying interaction sites within protein complexes
por: Das, Arindam Atanu, et al.
Publicado: (2016)

HMMER web server: 2015 update
por: Finn, Robert D., et al.
Publicado: (2015)

HMMER web server: 2018 update
por: Potter, Simon C, et al.
Publicado: (2018)

Genonets server—a web server for the construction, analysis and visualization of genotype networks
por: Khalid, Fahad, et al.
Publicado: (2016)

PSSweb: protein structural statistics web server
por: Gaillard, Thomas, et al.
Publicado: (2016)

Amino Acid Interaction (INTAA) web server
por: Galgonek, Jakub, et al.
Publicado: (2017)

webSDA: a web server to simulate macromolecular diffusional association
por: Yu, Xiaofeng, et al.
Publicado: (2015)

CSAR-web: a web server of contig scaffolding using algebraic rearrangements
por: Chen, Kun-Tze, et al.
Publicado: (2018)

PrankWeb: a web server for ligand binding site prediction and visualization
por: Jendele, Lukas, et al.
Publicado: (2019)

PockDrug-Server: a new web server for predicting pocket druggability on holo and apo proteins
por: Hussein, Hiba Abi, et al.
Publicado: (2015)

FAIR: A server for internal sequence repeats
por: Senthilkumar, Ramaswamy, et al.
Publicado: (2010)

NPDock: a web server for protein–nucleic acid docking
por: Tuszynska, Irina, et al.
Publicado: (2015)

CCTOP: a Consensus Constrained TOPology prediction web server
por: Dobson, László, et al.
Publicado: (2015)

ACFIS: a web server for fragment-based drug discovery
por: Hao, Ge-Fei, et al.
Publicado: (2016)

CTLPScanner: a web server for chromothripsis-like pattern detection
por: Yang, Jian, et al.
Publicado: (2016)

Companion: a web server for annotation and analysis of parasite genomes
por: Steinbiss, Sascha, et al.
Publicado: (2016)

PANNZER2: a rapid functional annotation web server
por: Törönen, Petri, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_s629b9ru2p57toc8sqg9rbpqbj