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Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone. iTOL version 5 introduces a completely new tree display engine, together with numerous new features. For ex...

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Detalles Bibliográficos
Autores principales: Letunic, Ivica, Bork, Peer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8265157/
https://www.ncbi.nlm.nih.gov/pubmed/33885785
http://dx.doi.org/10.1093/nar/gkab301
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author Letunic, Ivica
Bork, Peer
author_facet Letunic, Ivica
Bork, Peer
author_sort Letunic, Ivica
collection PubMed
description The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone. iTOL version 5 introduces a completely new tree display engine, together with numerous new features. For example, a new dataset type has been added (MEME motifs), while annotation options have been expanded for several existing ones. Node metadata display options have been extended and now also support non-numerical categorical values, as well as multiple values per node. Direct manual annotation is now available, providing a set of basic drawing and labeling tools, allowing users to draw shapes, labels and other features by hand directly onto the trees. Support for tree and dataset scales has been extended, providing fine control over line and label styles. Unrooted tree displays can now use the equal-daylight algorithm, proving a much greater display clarity. The user account system has been streamlined and expanded with new navigation options and currently handles >1 million trees from >70 000 individual users.
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spelling pubmed-82651572021-07-09 Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation Letunic, Ivica Bork, Peer Nucleic Acids Res Web Server Issue The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone. iTOL version 5 introduces a completely new tree display engine, together with numerous new features. For example, a new dataset type has been added (MEME motifs), while annotation options have been expanded for several existing ones. Node metadata display options have been extended and now also support non-numerical categorical values, as well as multiple values per node. Direct manual annotation is now available, providing a set of basic drawing and labeling tools, allowing users to draw shapes, labels and other features by hand directly onto the trees. Support for tree and dataset scales has been extended, providing fine control over line and label styles. Unrooted tree displays can now use the equal-daylight algorithm, proving a much greater display clarity. The user account system has been streamlined and expanded with new navigation options and currently handles >1 million trees from >70 000 individual users. Oxford University Press 2021-04-22 /pmc/articles/PMC8265157/ /pubmed/33885785 http://dx.doi.org/10.1093/nar/gkab301 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server Issue
Letunic, Ivica
Bork, Peer
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
title Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
title_full Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
title_fullStr Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
title_full_unstemmed Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
title_short Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
title_sort interactive tree of life (itol) v5: an online tool for phylogenetic tree display and annotation
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8265157/
https://www.ncbi.nlm.nih.gov/pubmed/33885785
http://dx.doi.org/10.1093/nar/gkab301
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