tinselR—an R Shiny Application for Annotating Phylogenetic Trees

Public health laboratories obtain whole-genome sequences of pathogens to confirm outbreaks and identify transmission routes. Here, we present tinselR, an open-source and user-friendly application for visualization and annotation of relatedness among pathogens with phylogenetic trees. By combining an...

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Detalles Bibliográficos
Autores principales: Hamlin, Jennafer A. P., Nakov, Teofil, Williams-Newkirk, Amanda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2021
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8265219/
https://www.ncbi.nlm.nih.gov/pubmed/34236227
http://dx.doi.org/10.1128/MRA.00227-21
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author Hamlin, Jennafer A. P.
Nakov, Teofil
Williams-Newkirk, Amanda
author_facet Hamlin, Jennafer A. P.
Nakov, Teofil
Williams-Newkirk, Amanda
author_sort Hamlin, Jennafer A. P.
collection PubMed
description Public health laboratories obtain whole-genome sequences of pathogens to confirm outbreaks and identify transmission routes. Here, we present tinselR, an open-source and user-friendly application for visualization and annotation of relatedness among pathogens with phylogenetic trees. By combining annotation and phylogenetics, we simplify one critical step in the pathogen analysis workflow.
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spelling pubmed-82652192021-07-09 tinselR—an R Shiny Application for Annotating Phylogenetic Trees Hamlin, Jennafer A. P. Nakov, Teofil Williams-Newkirk, Amanda Microbiol Resour Announc Databases and Software Public health laboratories obtain whole-genome sequences of pathogens to confirm outbreaks and identify transmission routes. Here, we present tinselR, an open-source and user-friendly application for visualization and annotation of relatedness among pathogens with phylogenetic trees. By combining annotation and phylogenetics, we simplify one critical step in the pathogen analysis workflow. American Society for Microbiology 2021-07-08 /pmc/articles/PMC8265219/ /pubmed/34236227 http://dx.doi.org/10.1128/MRA.00227-21 Text en https://doi.org/10.1128/AuthorWarrantyLicense.v1This is a work of the U.S. Government and is not subject to copyright protection in the United States. Foreign copyrights may apply.
spellingShingle Databases and Software
Hamlin, Jennafer A. P.
Nakov, Teofil
Williams-Newkirk, Amanda
tinselR—an R Shiny Application for Annotating Phylogenetic Trees
title tinselR—an R Shiny Application for Annotating Phylogenetic Trees
title_full tinselR—an R Shiny Application for Annotating Phylogenetic Trees
title_fullStr tinselR—an R Shiny Application for Annotating Phylogenetic Trees
title_full_unstemmed tinselR—an R Shiny Application for Annotating Phylogenetic Trees
title_short tinselR—an R Shiny Application for Annotating Phylogenetic Trees
title_sort tinselr—an r shiny application for annotating phylogenetic trees
topic Databases and Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8265219/
https://www.ncbi.nlm.nih.gov/pubmed/34236227
http://dx.doi.org/10.1128/MRA.00227-21
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