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DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network

Non-invasive whole-brain scans aid the diagnosis of neuropsychiatric disorder diseases such as autism, dementia, and brain cancer. The assessable analysis for autism spectrum disorders (ASD) is rationally challenging due to the limitations of publicly available datasets. For diagnostic or prognostic...

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Autores principales: Ahammed, Md Shale, Niu, Sijie, Ahmed, Md Rishad, Dong, Jiwen, Gao, Xizhan, Chen, Yuehui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8265393/
https://www.ncbi.nlm.nih.gov/pubmed/34248531
http://dx.doi.org/10.3389/fninf.2021.635657
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author Ahammed, Md Shale
Niu, Sijie
Ahmed, Md Rishad
Dong, Jiwen
Gao, Xizhan
Chen, Yuehui
author_facet Ahammed, Md Shale
Niu, Sijie
Ahmed, Md Rishad
Dong, Jiwen
Gao, Xizhan
Chen, Yuehui
author_sort Ahammed, Md Shale
collection PubMed
description Non-invasive whole-brain scans aid the diagnosis of neuropsychiatric disorder diseases such as autism, dementia, and brain cancer. The assessable analysis for autism spectrum disorders (ASD) is rationally challenging due to the limitations of publicly available datasets. For diagnostic or prognostic tools, functional Magnetic Resonance Imaging (fMRI) exposed affirmation to the biomarkers in neuroimaging research because of fMRI pickup inherent connectivity between the brain and regions. There are profound studies in ASD with introducing machine learning or deep learning methods that have manifested advanced steps for ASD predictions based on fMRI data. However, utmost antecedent models have an inadequacy in their capacity to manipulate performance metrics such as accuracy, precision, recall, and F1-score. To overcome these problems, we proposed an avant-garde DarkASDNet, which has the competence to extract features from a lower level to a higher level and bring out promising results. In this work, we considered 3D fMRI data to predict binary classification between ASD and typical control (TC). Firstly, we pre-processed the 3D fMRI data by adopting proper slice time correction and normalization. Then, we introduced a novel DarkASDNet which surpassed the benchmark accuracy for the classification of ASD. Our model's outcomes unveil that our proposed method established state-of-the-art accuracy of 94.70% to classify ASD vs. TC in ABIDE-I, NYU dataset. Finally, we contemplated our model by performing evaluation metrics including precision, recall, F1-score, ROC curve, and AUC score, and legitimize by distinguishing with recent literature descriptions to vindicate our outcomes. The proposed DarkASDNet architecture provides a novel benchmark approach for ASD classification using fMRI processed data.
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spelling pubmed-82653932021-07-09 DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network Ahammed, Md Shale Niu, Sijie Ahmed, Md Rishad Dong, Jiwen Gao, Xizhan Chen, Yuehui Front Neuroinform Neuroscience Non-invasive whole-brain scans aid the diagnosis of neuropsychiatric disorder diseases such as autism, dementia, and brain cancer. The assessable analysis for autism spectrum disorders (ASD) is rationally challenging due to the limitations of publicly available datasets. For diagnostic or prognostic tools, functional Magnetic Resonance Imaging (fMRI) exposed affirmation to the biomarkers in neuroimaging research because of fMRI pickup inherent connectivity between the brain and regions. There are profound studies in ASD with introducing machine learning or deep learning methods that have manifested advanced steps for ASD predictions based on fMRI data. However, utmost antecedent models have an inadequacy in their capacity to manipulate performance metrics such as accuracy, precision, recall, and F1-score. To overcome these problems, we proposed an avant-garde DarkASDNet, which has the competence to extract features from a lower level to a higher level and bring out promising results. In this work, we considered 3D fMRI data to predict binary classification between ASD and typical control (TC). Firstly, we pre-processed the 3D fMRI data by adopting proper slice time correction and normalization. Then, we introduced a novel DarkASDNet which surpassed the benchmark accuracy for the classification of ASD. Our model's outcomes unveil that our proposed method established state-of-the-art accuracy of 94.70% to classify ASD vs. TC in ABIDE-I, NYU dataset. Finally, we contemplated our model by performing evaluation metrics including precision, recall, F1-score, ROC curve, and AUC score, and legitimize by distinguishing with recent literature descriptions to vindicate our outcomes. The proposed DarkASDNet architecture provides a novel benchmark approach for ASD classification using fMRI processed data. Frontiers Media S.A. 2021-06-24 /pmc/articles/PMC8265393/ /pubmed/34248531 http://dx.doi.org/10.3389/fninf.2021.635657 Text en Copyright © 2021 Ahammed, Niu, Ahmed, Dong, Gao and Chen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Ahammed, Md Shale
Niu, Sijie
Ahmed, Md Rishad
Dong, Jiwen
Gao, Xizhan
Chen, Yuehui
DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network
title DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network
title_full DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network
title_fullStr DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network
title_full_unstemmed DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network
title_short DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network
title_sort darkasdnet: classification of asd on functional mri using deep neural network
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8265393/
https://www.ncbi.nlm.nih.gov/pubmed/34248531
http://dx.doi.org/10.3389/fninf.2021.635657
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