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The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status

There is still an obvious lack of information on Sokolov's Dwarf Hamster (Cricetulus sokolovi) which belongs to subfamily Cricetinae because the species is only rarely found in Gobi desert. In this study, we obtained the complete mitochondrial genome sequences of C. sokolovi. The genome is 16,2...

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Autores principales: Qin, Boxin, Xie, Fei, Chen, Dan, Wang, Qiong, Chen, Shunde
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8266243/
https://www.ncbi.nlm.nih.gov/pubmed/34286095
http://dx.doi.org/10.1080/23802359.2021.1914212
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author Qin, Boxin
Xie, Fei
Chen, Dan
Wang, Qiong
Chen, Shunde
author_facet Qin, Boxin
Xie, Fei
Chen, Dan
Wang, Qiong
Chen, Shunde
author_sort Qin, Boxin
collection PubMed
description There is still an obvious lack of information on Sokolov's Dwarf Hamster (Cricetulus sokolovi) which belongs to subfamily Cricetinae because the species is only rarely found in Gobi desert. In this study, we obtained the complete mitochondrial genome sequences of C. sokolovi. The genome is 16,292bp in length and has a base composition of 33.5% A, 30.5% T, 22.9% C, and 13.1% G. The mitogenome structure, consisting of 13 protein-coding genes, two rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, and one control region, is similar to that of typical vertebrate mitochondrial genomes of other rodents. We restructured a Bayesian phylogenetic tree by using 12 species belonging to subfamily Cricetinae. As indicated by the phylogenetic tree, genus Cricetulus is polyphyletic group, and C. Sokolovi is the closest relative of Cricetulus griseus. The mitochondrial genome can provide basic data for further study on the phylogenetic relationship of subfamily Cricetinae.
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spelling pubmed-82662432021-07-19 The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status Qin, Boxin Xie, Fei Chen, Dan Wang, Qiong Chen, Shunde Mitochondrial DNA B Resour Mitogenome Announcement There is still an obvious lack of information on Sokolov's Dwarf Hamster (Cricetulus sokolovi) which belongs to subfamily Cricetinae because the species is only rarely found in Gobi desert. In this study, we obtained the complete mitochondrial genome sequences of C. sokolovi. The genome is 16,292bp in length and has a base composition of 33.5% A, 30.5% T, 22.9% C, and 13.1% G. The mitogenome structure, consisting of 13 protein-coding genes, two rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, and one control region, is similar to that of typical vertebrate mitochondrial genomes of other rodents. We restructured a Bayesian phylogenetic tree by using 12 species belonging to subfamily Cricetinae. As indicated by the phylogenetic tree, genus Cricetulus is polyphyletic group, and C. Sokolovi is the closest relative of Cricetulus griseus. The mitochondrial genome can provide basic data for further study on the phylogenetic relationship of subfamily Cricetinae. Taylor & Francis 2021-07-06 /pmc/articles/PMC8266243/ /pubmed/34286095 http://dx.doi.org/10.1080/23802359.2021.1914212 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Qin, Boxin
Xie, Fei
Chen, Dan
Wang, Qiong
Chen, Shunde
The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status
title The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status
title_full The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status
title_fullStr The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status
title_full_unstemmed The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status
title_short The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status
title_sort complete mitogenome of sokolov’s dwarf hamster (cricetulus sokolovi) and implication of phylogenetic status
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8266243/
https://www.ncbi.nlm.nih.gov/pubmed/34286095
http://dx.doi.org/10.1080/23802359.2021.1914212
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