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The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status
There is still an obvious lack of information on Sokolov's Dwarf Hamster (Cricetulus sokolovi) which belongs to subfamily Cricetinae because the species is only rarely found in Gobi desert. In this study, we obtained the complete mitochondrial genome sequences of C. sokolovi. The genome is 16,2...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8266243/ https://www.ncbi.nlm.nih.gov/pubmed/34286095 http://dx.doi.org/10.1080/23802359.2021.1914212 |
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author | Qin, Boxin Xie, Fei Chen, Dan Wang, Qiong Chen, Shunde |
author_facet | Qin, Boxin Xie, Fei Chen, Dan Wang, Qiong Chen, Shunde |
author_sort | Qin, Boxin |
collection | PubMed |
description | There is still an obvious lack of information on Sokolov's Dwarf Hamster (Cricetulus sokolovi) which belongs to subfamily Cricetinae because the species is only rarely found in Gobi desert. In this study, we obtained the complete mitochondrial genome sequences of C. sokolovi. The genome is 16,292bp in length and has a base composition of 33.5% A, 30.5% T, 22.9% C, and 13.1% G. The mitogenome structure, consisting of 13 protein-coding genes, two rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, and one control region, is similar to that of typical vertebrate mitochondrial genomes of other rodents. We restructured a Bayesian phylogenetic tree by using 12 species belonging to subfamily Cricetinae. As indicated by the phylogenetic tree, genus Cricetulus is polyphyletic group, and C. Sokolovi is the closest relative of Cricetulus griseus. The mitochondrial genome can provide basic data for further study on the phylogenetic relationship of subfamily Cricetinae. |
format | Online Article Text |
id | pubmed-8266243 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-82662432021-07-19 The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status Qin, Boxin Xie, Fei Chen, Dan Wang, Qiong Chen, Shunde Mitochondrial DNA B Resour Mitogenome Announcement There is still an obvious lack of information on Sokolov's Dwarf Hamster (Cricetulus sokolovi) which belongs to subfamily Cricetinae because the species is only rarely found in Gobi desert. In this study, we obtained the complete mitochondrial genome sequences of C. sokolovi. The genome is 16,292bp in length and has a base composition of 33.5% A, 30.5% T, 22.9% C, and 13.1% G. The mitogenome structure, consisting of 13 protein-coding genes, two rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, and one control region, is similar to that of typical vertebrate mitochondrial genomes of other rodents. We restructured a Bayesian phylogenetic tree by using 12 species belonging to subfamily Cricetinae. As indicated by the phylogenetic tree, genus Cricetulus is polyphyletic group, and C. Sokolovi is the closest relative of Cricetulus griseus. The mitochondrial genome can provide basic data for further study on the phylogenetic relationship of subfamily Cricetinae. Taylor & Francis 2021-07-06 /pmc/articles/PMC8266243/ /pubmed/34286095 http://dx.doi.org/10.1080/23802359.2021.1914212 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Qin, Boxin Xie, Fei Chen, Dan Wang, Qiong Chen, Shunde The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status |
title | The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status |
title_full | The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status |
title_fullStr | The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status |
title_full_unstemmed | The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status |
title_short | The complete mitogenome of Sokolov’s Dwarf Hamster (Cricetulus sokolovi) and implication of phylogenetic status |
title_sort | complete mitogenome of sokolov’s dwarf hamster (cricetulus sokolovi) and implication of phylogenetic status |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8266243/ https://www.ncbi.nlm.nih.gov/pubmed/34286095 http://dx.doi.org/10.1080/23802359.2021.1914212 |
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