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Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients

Since the imbalance of gene expression has been demonstrated to tightly related to breast cancer (BRCA) genesis and growth, common genes expressed of BRCA were screened to explore the essence in-between. In current work, most common differentially expressed genes (DEGs) in various subtypes of BRCA w...

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Autores principales: Li, Jinyu, Huang, Gena, Ren, Caixia, Wang, Ning, Sui, Silei, Zhao, Zuowei, Li, Man
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8266316/
https://www.ncbi.nlm.nih.gov/pubmed/34175839
http://dx.doi.org/10.18632/aging.203178
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author Li, Jinyu
Huang, Gena
Ren, Caixia
Wang, Ning
Sui, Silei
Zhao, Zuowei
Li, Man
author_facet Li, Jinyu
Huang, Gena
Ren, Caixia
Wang, Ning
Sui, Silei
Zhao, Zuowei
Li, Man
author_sort Li, Jinyu
collection PubMed
description Since the imbalance of gene expression has been demonstrated to tightly related to breast cancer (BRCA) genesis and growth, common genes expressed of BRCA were screened to explore the essence in-between. In current work, most common differentially expressed genes (DEGs) in various subtypes of BRCA were identified. Functional enrichment analysis illustrated the driving factor of deactivation of the cell cycle and the oocyte meiosis, which critically triggers the development of BRCA. Herein, we constructed a 12-gene prognostic risk model relative to differential gene expression. Subsequently, the K-M curves, analysis on time-ROC curve and Cox regression were performed to assess this risk model by determining the respective prognostic value, and the prediction performance were ascertained for both training and validation cohorts. In addition, multivariate Cox regression was analysed to reveal the independence between risk score and prognostic stage, and the accuracy and sensitivity of prognosis are particularly improved after clinical indicators are included into the analysis. In summary, this study offers novel insights into the imbalance of gene expression within BRCA, and highlights 12 selected genes associated with patient prognosis. The risk model can help individualize treatment for patients at different risks, and propose precise strategies and treatments for BRCA therapy.
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spelling pubmed-82663162021-07-09 Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients Li, Jinyu Huang, Gena Ren, Caixia Wang, Ning Sui, Silei Zhao, Zuowei Li, Man Aging (Albany NY) Research Paper Since the imbalance of gene expression has been demonstrated to tightly related to breast cancer (BRCA) genesis and growth, common genes expressed of BRCA were screened to explore the essence in-between. In current work, most common differentially expressed genes (DEGs) in various subtypes of BRCA were identified. Functional enrichment analysis illustrated the driving factor of deactivation of the cell cycle and the oocyte meiosis, which critically triggers the development of BRCA. Herein, we constructed a 12-gene prognostic risk model relative to differential gene expression. Subsequently, the K-M curves, analysis on time-ROC curve and Cox regression were performed to assess this risk model by determining the respective prognostic value, and the prediction performance were ascertained for both training and validation cohorts. In addition, multivariate Cox regression was analysed to reveal the independence between risk score and prognostic stage, and the accuracy and sensitivity of prognosis are particularly improved after clinical indicators are included into the analysis. In summary, this study offers novel insights into the imbalance of gene expression within BRCA, and highlights 12 selected genes associated with patient prognosis. The risk model can help individualize treatment for patients at different risks, and propose precise strategies and treatments for BRCA therapy. Impact Journals 2021-06-26 /pmc/articles/PMC8266316/ /pubmed/34175839 http://dx.doi.org/10.18632/aging.203178 Text en Copyright: © 2021 Li et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Li, Jinyu
Huang, Gena
Ren, Caixia
Wang, Ning
Sui, Silei
Zhao, Zuowei
Li, Man
Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients
title Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients
title_full Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients
title_fullStr Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients
title_full_unstemmed Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients
title_short Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients
title_sort identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8266316/
https://www.ncbi.nlm.nih.gov/pubmed/34175839
http://dx.doi.org/10.18632/aging.203178
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