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Automatic Pancreatic Ductal Adenocarcinoma Detection in Whole Slide Images Using Deep Convolutional Neural Networks

Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest cancer types worldwide, with the lowest 5-year survival rate among all kinds of cancers. Histopathology image analysis is considered a gold standard for PDAC detection and diagnosis. However, the manual diagnosis used in current clinica...

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Autores principales: Fu, Hao, Mi, Weiming, Pan, Boju, Guo, Yucheng, Li, Junjie, Xu, Rongyan, Zheng, Jie, Zou, Chunli, Zhang, Tao, Liang, Zhiyong, Zou, Junzhong, Zou, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8267174/
https://www.ncbi.nlm.nih.gov/pubmed/34249702
http://dx.doi.org/10.3389/fonc.2021.665929
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author Fu, Hao
Mi, Weiming
Pan, Boju
Guo, Yucheng
Li, Junjie
Xu, Rongyan
Zheng, Jie
Zou, Chunli
Zhang, Tao
Liang, Zhiyong
Zou, Junzhong
Zou, Hao
author_facet Fu, Hao
Mi, Weiming
Pan, Boju
Guo, Yucheng
Li, Junjie
Xu, Rongyan
Zheng, Jie
Zou, Chunli
Zhang, Tao
Liang, Zhiyong
Zou, Junzhong
Zou, Hao
author_sort Fu, Hao
collection PubMed
description Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest cancer types worldwide, with the lowest 5-year survival rate among all kinds of cancers. Histopathology image analysis is considered a gold standard for PDAC detection and diagnosis. However, the manual diagnosis used in current clinical practice is a tedious and time-consuming task and diagnosis concordance can be low. With the development of digital imaging and machine learning, several scholars have proposed PDAC analysis approaches based on feature extraction methods that rely on field knowledge. However, feature-based classification methods are applicable only to a specific problem and lack versatility, so that the deep-learning method is becoming a vital alternative to feature extraction. This paper proposes the first deep convolutional neural network architecture for classifying and segmenting pancreatic histopathological images on a relatively large WSI dataset. Our automatic patch-level approach achieved 95.3% classification accuracy and the WSI-level approach achieved 100%. Additionally, we visualized the classification and segmentation outcomes of histopathological images to determine which areas of an image are more important for PDAC identification. Experimental results demonstrate that our proposed model can effectively diagnose PDAC using histopathological images, which illustrates the potential of this practical application.
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spelling pubmed-82671742021-07-10 Automatic Pancreatic Ductal Adenocarcinoma Detection in Whole Slide Images Using Deep Convolutional Neural Networks Fu, Hao Mi, Weiming Pan, Boju Guo, Yucheng Li, Junjie Xu, Rongyan Zheng, Jie Zou, Chunli Zhang, Tao Liang, Zhiyong Zou, Junzhong Zou, Hao Front Oncol Oncology Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest cancer types worldwide, with the lowest 5-year survival rate among all kinds of cancers. Histopathology image analysis is considered a gold standard for PDAC detection and diagnosis. However, the manual diagnosis used in current clinical practice is a tedious and time-consuming task and diagnosis concordance can be low. With the development of digital imaging and machine learning, several scholars have proposed PDAC analysis approaches based on feature extraction methods that rely on field knowledge. However, feature-based classification methods are applicable only to a specific problem and lack versatility, so that the deep-learning method is becoming a vital alternative to feature extraction. This paper proposes the first deep convolutional neural network architecture for classifying and segmenting pancreatic histopathological images on a relatively large WSI dataset. Our automatic patch-level approach achieved 95.3% classification accuracy and the WSI-level approach achieved 100%. Additionally, we visualized the classification and segmentation outcomes of histopathological images to determine which areas of an image are more important for PDAC identification. Experimental results demonstrate that our proposed model can effectively diagnose PDAC using histopathological images, which illustrates the potential of this practical application. Frontiers Media S.A. 2021-06-25 /pmc/articles/PMC8267174/ /pubmed/34249702 http://dx.doi.org/10.3389/fonc.2021.665929 Text en Copyright © 2021 Fu, Mi, Pan, Guo, Li, Xu, Zheng, Zou, Zhang, Liang, Zou and Zou https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Fu, Hao
Mi, Weiming
Pan, Boju
Guo, Yucheng
Li, Junjie
Xu, Rongyan
Zheng, Jie
Zou, Chunli
Zhang, Tao
Liang, Zhiyong
Zou, Junzhong
Zou, Hao
Automatic Pancreatic Ductal Adenocarcinoma Detection in Whole Slide Images Using Deep Convolutional Neural Networks
title Automatic Pancreatic Ductal Adenocarcinoma Detection in Whole Slide Images Using Deep Convolutional Neural Networks
title_full Automatic Pancreatic Ductal Adenocarcinoma Detection in Whole Slide Images Using Deep Convolutional Neural Networks
title_fullStr Automatic Pancreatic Ductal Adenocarcinoma Detection in Whole Slide Images Using Deep Convolutional Neural Networks
title_full_unstemmed Automatic Pancreatic Ductal Adenocarcinoma Detection in Whole Slide Images Using Deep Convolutional Neural Networks
title_short Automatic Pancreatic Ductal Adenocarcinoma Detection in Whole Slide Images Using Deep Convolutional Neural Networks
title_sort automatic pancreatic ductal adenocarcinoma detection in whole slide images using deep convolutional neural networks
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8267174/
https://www.ncbi.nlm.nih.gov/pubmed/34249702
http://dx.doi.org/10.3389/fonc.2021.665929
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