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Effect of the Nucleophile’s Nature on Chloroacetanilide Herbicides Cleavage Reaction Mechanism. A DFT Study

In this study, the degradation mechanism of chloroacetanilide herbicides in the presence of four different nucleophiles, namely: Br(−), I(−), HS(−), and S(2)O(3)(−2), was theoretically evaluated using the dispersion-corrected hybrid functional wB97XD and the DGDZVP as a basis set. The comparison of...

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Autores principales: Cuesta, Sebastián A., Torres, F. Javier, Rincón, Luis, Paz, José Luis, Márquez, Edgar A., Mora, José R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8268095/
https://www.ncbi.nlm.nih.gov/pubmed/34206795
http://dx.doi.org/10.3390/ijms22136876
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author Cuesta, Sebastián A.
Torres, F. Javier
Rincón, Luis
Paz, José Luis
Márquez, Edgar A.
Mora, José R.
author_facet Cuesta, Sebastián A.
Torres, F. Javier
Rincón, Luis
Paz, José Luis
Márquez, Edgar A.
Mora, José R.
author_sort Cuesta, Sebastián A.
collection PubMed
description In this study, the degradation mechanism of chloroacetanilide herbicides in the presence of four different nucleophiles, namely: Br(−), I(−), HS(−), and S(2)O(3)(−2), was theoretically evaluated using the dispersion-corrected hybrid functional wB97XD and the DGDZVP as a basis set. The comparison of computed activation energies with experimental data shows an excellent correlation (R(2) = 0.98 for alachlor and 0.97 for propachlor). The results suggest that the best nucleophiles are those where a sulfur atom performs the nucleophilic attack, whereas the other species are less reactive. Furthermore, it was observed that the different R groups of chloroacetanilide herbicides have a negligible effect on the activation energy of the process. Further insights into the mechanism show that geometrical changes and electronic rearrangements contribute 60% and 40% of the activation energy, respectively. A deeper analysis of the reaction coordinate was conducted, employing the evolution chemical potential, hardness, and electrophilicity index, as well as the electronic flux. The charge analysis shows that the electron density of chlorine increases as the nucleophilic attack occurs. Finally, NBO analysis indicates that the nucleophilic substitution in chloroacetanilides is an asynchronous process with a late transition state for all models except for the case of the iodide attack, which occurs through an early transition state in the reaction.
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spelling pubmed-82680952021-07-10 Effect of the Nucleophile’s Nature on Chloroacetanilide Herbicides Cleavage Reaction Mechanism. A DFT Study Cuesta, Sebastián A. Torres, F. Javier Rincón, Luis Paz, José Luis Márquez, Edgar A. Mora, José R. Int J Mol Sci Article In this study, the degradation mechanism of chloroacetanilide herbicides in the presence of four different nucleophiles, namely: Br(−), I(−), HS(−), and S(2)O(3)(−2), was theoretically evaluated using the dispersion-corrected hybrid functional wB97XD and the DGDZVP as a basis set. The comparison of computed activation energies with experimental data shows an excellent correlation (R(2) = 0.98 for alachlor and 0.97 for propachlor). The results suggest that the best nucleophiles are those where a sulfur atom performs the nucleophilic attack, whereas the other species are less reactive. Furthermore, it was observed that the different R groups of chloroacetanilide herbicides have a negligible effect on the activation energy of the process. Further insights into the mechanism show that geometrical changes and electronic rearrangements contribute 60% and 40% of the activation energy, respectively. A deeper analysis of the reaction coordinate was conducted, employing the evolution chemical potential, hardness, and electrophilicity index, as well as the electronic flux. The charge analysis shows that the electron density of chlorine increases as the nucleophilic attack occurs. Finally, NBO analysis indicates that the nucleophilic substitution in chloroacetanilides is an asynchronous process with a late transition state for all models except for the case of the iodide attack, which occurs through an early transition state in the reaction. MDPI 2021-06-26 /pmc/articles/PMC8268095/ /pubmed/34206795 http://dx.doi.org/10.3390/ijms22136876 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cuesta, Sebastián A.
Torres, F. Javier
Rincón, Luis
Paz, José Luis
Márquez, Edgar A.
Mora, José R.
Effect of the Nucleophile’s Nature on Chloroacetanilide Herbicides Cleavage Reaction Mechanism. A DFT Study
title Effect of the Nucleophile’s Nature on Chloroacetanilide Herbicides Cleavage Reaction Mechanism. A DFT Study
title_full Effect of the Nucleophile’s Nature on Chloroacetanilide Herbicides Cleavage Reaction Mechanism. A DFT Study
title_fullStr Effect of the Nucleophile’s Nature on Chloroacetanilide Herbicides Cleavage Reaction Mechanism. A DFT Study
title_full_unstemmed Effect of the Nucleophile’s Nature on Chloroacetanilide Herbicides Cleavage Reaction Mechanism. A DFT Study
title_short Effect of the Nucleophile’s Nature on Chloroacetanilide Herbicides Cleavage Reaction Mechanism. A DFT Study
title_sort effect of the nucleophile’s nature on chloroacetanilide herbicides cleavage reaction mechanism. a dft study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8268095/
https://www.ncbi.nlm.nih.gov/pubmed/34206795
http://dx.doi.org/10.3390/ijms22136876
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