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Machine Learning for Analyzing Non-Countermeasure Factors Affecting Early Spread of COVID-19
The COVID-19 pandemic affected the whole world, but not all countries were impacted equally. This opens the question of what factors can explain the initial faster spread in some countries compared to others. Many such factors are overshadowed by the effect of the countermeasures, so we studied the...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8268491/ https://www.ncbi.nlm.nih.gov/pubmed/34201618 http://dx.doi.org/10.3390/ijerph18136750 |
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author | Janko, Vito Slapničar, Gašper Dovgan, Erik Reščič, Nina Kolenik, Tine Gjoreski, Martin Smerkol, Maj Gams, Matjaž Luštrek, Mitja |
author_facet | Janko, Vito Slapničar, Gašper Dovgan, Erik Reščič, Nina Kolenik, Tine Gjoreski, Martin Smerkol, Maj Gams, Matjaž Luštrek, Mitja |
author_sort | Janko, Vito |
collection | PubMed |
description | The COVID-19 pandemic affected the whole world, but not all countries were impacted equally. This opens the question of what factors can explain the initial faster spread in some countries compared to others. Many such factors are overshadowed by the effect of the countermeasures, so we studied the early phases of the infection when countermeasures had not yet taken place. We collected the most diverse dataset of potentially relevant factors and infection metrics to date for this task. Using it, we show the importance of different factors and factor categories as determined by both statistical methods and machine learning (ML) feature selection (FS) approaches. Factors related to culture (e.g., individualism, openness), development, and travel proved the most important. A more thorough factor analysis was then made using a novel rule discovery algorithm. We also show how interconnected these factors are and caution against relying on ML analysis in isolation. Importantly, we explore potential pitfalls found in the methodology of similar work and demonstrate their impact on COVID-19 data analysis. Our best models using the decision tree classifier can predict the infection class with roughly 80% accuracy. |
format | Online Article Text |
id | pubmed-8268491 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-82684912021-07-10 Machine Learning for Analyzing Non-Countermeasure Factors Affecting Early Spread of COVID-19 Janko, Vito Slapničar, Gašper Dovgan, Erik Reščič, Nina Kolenik, Tine Gjoreski, Martin Smerkol, Maj Gams, Matjaž Luštrek, Mitja Int J Environ Res Public Health Article The COVID-19 pandemic affected the whole world, but not all countries were impacted equally. This opens the question of what factors can explain the initial faster spread in some countries compared to others. Many such factors are overshadowed by the effect of the countermeasures, so we studied the early phases of the infection when countermeasures had not yet taken place. We collected the most diverse dataset of potentially relevant factors and infection metrics to date for this task. Using it, we show the importance of different factors and factor categories as determined by both statistical methods and machine learning (ML) feature selection (FS) approaches. Factors related to culture (e.g., individualism, openness), development, and travel proved the most important. A more thorough factor analysis was then made using a novel rule discovery algorithm. We also show how interconnected these factors are and caution against relying on ML analysis in isolation. Importantly, we explore potential pitfalls found in the methodology of similar work and demonstrate their impact on COVID-19 data analysis. Our best models using the decision tree classifier can predict the infection class with roughly 80% accuracy. MDPI 2021-06-23 /pmc/articles/PMC8268491/ /pubmed/34201618 http://dx.doi.org/10.3390/ijerph18136750 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Janko, Vito Slapničar, Gašper Dovgan, Erik Reščič, Nina Kolenik, Tine Gjoreski, Martin Smerkol, Maj Gams, Matjaž Luštrek, Mitja Machine Learning for Analyzing Non-Countermeasure Factors Affecting Early Spread of COVID-19 |
title | Machine Learning for Analyzing Non-Countermeasure Factors Affecting Early Spread of COVID-19 |
title_full | Machine Learning for Analyzing Non-Countermeasure Factors Affecting Early Spread of COVID-19 |
title_fullStr | Machine Learning for Analyzing Non-Countermeasure Factors Affecting Early Spread of COVID-19 |
title_full_unstemmed | Machine Learning for Analyzing Non-Countermeasure Factors Affecting Early Spread of COVID-19 |
title_short | Machine Learning for Analyzing Non-Countermeasure Factors Affecting Early Spread of COVID-19 |
title_sort | machine learning for analyzing non-countermeasure factors affecting early spread of covid-19 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8268491/ https://www.ncbi.nlm.nih.gov/pubmed/34201618 http://dx.doi.org/10.3390/ijerph18136750 |
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