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Product Distributions of Cytochrome P450 OleT(JE) with Phenyl-Substituted Fatty Acids: A Computational Study

There are two types of cytochrome P450 enzymes in nature, namely, the monooxygenases and the peroxygenases. Both enzyme classes participate in substrate biodegradation or biosynthesis reactions in nature, but the P450 monooxygenases use dioxygen, while the peroxygenases take H(2)O(2) in their cataly...

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Autores principales: Lin, Yen-Ting, de Visser, Sam P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8269385/
https://www.ncbi.nlm.nih.gov/pubmed/34281222
http://dx.doi.org/10.3390/ijms22137172
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author Lin, Yen-Ting
de Visser, Sam P.
author_facet Lin, Yen-Ting
de Visser, Sam P.
author_sort Lin, Yen-Ting
collection PubMed
description There are two types of cytochrome P450 enzymes in nature, namely, the monooxygenases and the peroxygenases. Both enzyme classes participate in substrate biodegradation or biosynthesis reactions in nature, but the P450 monooxygenases use dioxygen, while the peroxygenases take H(2)O(2) in their catalytic cycle instead. By contrast to the P450 monooxygenases, the P450 peroxygenases do not require an external redox partner to deliver electrons during the catalytic cycle, and also no external proton source is needed. Therefore, they are fully self-sufficient, which affords them opportunities in biotechnological applications. One specific P450 peroxygenase, namely, P450 OleT(JE), reacts with long-chain linear fatty acids through oxidative decarboxylation to form hydrocarbons and, as such, has been implicated as a suitable source for the biosynthesis of biofuels. Unfortunately, the reactions were shown to produce a considerable amount of side products originating from C(α) and C(β) hydroxylation and desaturation. These product distributions were found to be strongly dependent on whether the substrate had substituents on the C(α) and/or C(β) atoms. To understand the bifurcation pathways of substrate activation by P450 OleT(JE) leading to decarboxylation, C(α) hydroxylation, C(β) hydroxylation and C(α)–C(β) desaturation, we performed a computational study using 3-phenylpropionate and 2-phenylbutyrate as substrates. We set up large cluster models containing the heme, the substrate and the key features of the substrate binding pocket and calculated (using density functional theory) the pathways leading to the four possible products. This work predicts that the two substrates will react with different reaction rates due to accessibility differences of the substrates to the active oxidant, and, as a consequence, these two substrates will also generate different products. This work explains how the substrate binding pocket of P450 OleT(JE) guides a reaction to a chemoselectivity.
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spelling pubmed-82693852021-07-10 Product Distributions of Cytochrome P450 OleT(JE) with Phenyl-Substituted Fatty Acids: A Computational Study Lin, Yen-Ting de Visser, Sam P. Int J Mol Sci Article There are two types of cytochrome P450 enzymes in nature, namely, the monooxygenases and the peroxygenases. Both enzyme classes participate in substrate biodegradation or biosynthesis reactions in nature, but the P450 monooxygenases use dioxygen, while the peroxygenases take H(2)O(2) in their catalytic cycle instead. By contrast to the P450 monooxygenases, the P450 peroxygenases do not require an external redox partner to deliver electrons during the catalytic cycle, and also no external proton source is needed. Therefore, they are fully self-sufficient, which affords them opportunities in biotechnological applications. One specific P450 peroxygenase, namely, P450 OleT(JE), reacts with long-chain linear fatty acids through oxidative decarboxylation to form hydrocarbons and, as such, has been implicated as a suitable source for the biosynthesis of biofuels. Unfortunately, the reactions were shown to produce a considerable amount of side products originating from C(α) and C(β) hydroxylation and desaturation. These product distributions were found to be strongly dependent on whether the substrate had substituents on the C(α) and/or C(β) atoms. To understand the bifurcation pathways of substrate activation by P450 OleT(JE) leading to decarboxylation, C(α) hydroxylation, C(β) hydroxylation and C(α)–C(β) desaturation, we performed a computational study using 3-phenylpropionate and 2-phenylbutyrate as substrates. We set up large cluster models containing the heme, the substrate and the key features of the substrate binding pocket and calculated (using density functional theory) the pathways leading to the four possible products. This work predicts that the two substrates will react with different reaction rates due to accessibility differences of the substrates to the active oxidant, and, as a consequence, these two substrates will also generate different products. This work explains how the substrate binding pocket of P450 OleT(JE) guides a reaction to a chemoselectivity. MDPI 2021-07-02 /pmc/articles/PMC8269385/ /pubmed/34281222 http://dx.doi.org/10.3390/ijms22137172 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lin, Yen-Ting
de Visser, Sam P.
Product Distributions of Cytochrome P450 OleT(JE) with Phenyl-Substituted Fatty Acids: A Computational Study
title Product Distributions of Cytochrome P450 OleT(JE) with Phenyl-Substituted Fatty Acids: A Computational Study
title_full Product Distributions of Cytochrome P450 OleT(JE) with Phenyl-Substituted Fatty Acids: A Computational Study
title_fullStr Product Distributions of Cytochrome P450 OleT(JE) with Phenyl-Substituted Fatty Acids: A Computational Study
title_full_unstemmed Product Distributions of Cytochrome P450 OleT(JE) with Phenyl-Substituted Fatty Acids: A Computational Study
title_short Product Distributions of Cytochrome P450 OleT(JE) with Phenyl-Substituted Fatty Acids: A Computational Study
title_sort product distributions of cytochrome p450 olet(je) with phenyl-substituted fatty acids: a computational study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8269385/
https://www.ncbi.nlm.nih.gov/pubmed/34281222
http://dx.doi.org/10.3390/ijms22137172
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