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Updating search strategies for literature reviews with OUR2D2: an open-source computer application

BACKGROUND: While writing a scoping review, we needed to update our search strategy. We wanted to capture articles generated by our additional search terms and articles published since our original search. Simultaneously, we strove to optimize project resources by not rescreening articles that had b...

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Autores principales: Lohr, Abby M., Van Gorden, Noah, McClelland, D. Jean, Dubinsky, Ellen, Gerald, Lynn B., Wilkinson-Lee, Ada, Carvajal, Scott C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: University Library System, University of Pittsburgh 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8270383/
https://www.ncbi.nlm.nih.gov/pubmed/34285675
http://dx.doi.org/10.5195/jmla.2021.1105
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author Lohr, Abby M.
Van Gorden, Noah
McClelland, D. Jean
Dubinsky, Ellen
Gerald, Lynn B.
Wilkinson-Lee, Ada
Carvajal, Scott C.
author_facet Lohr, Abby M.
Van Gorden, Noah
McClelland, D. Jean
Dubinsky, Ellen
Gerald, Lynn B.
Wilkinson-Lee, Ada
Carvajal, Scott C.
author_sort Lohr, Abby M.
collection PubMed
description BACKGROUND: While writing a scoping review, we needed to update our search strategy. We wanted to capture articles generated by our additional search terms and articles published since our original search. Simultaneously, we strove to optimize project resources by not rescreening articles that had been captured in our original results. CASE PRESENTATION: In response, we created Open Update Re-run Deduplicate (OUR2D2), a computer application that allows the user to compare search results from a variety of library databases. OUR2D2 supports extensible markup language (XML) files from EndNote and comma-separated values (CSV) files using article titles for comparisons. We conducted unit tests to ensure appropriate functionality as well as accurate data extraction and analysis. We tested OUR2D2 by comparing original and updated search results from PubMed, Embase, Clarivate Web of Science, CINAHL, Scopus, ProQuest Dissertation and Theses, and Lens and estimate that this application saved twenty-one hours of work during the screening process. CONCLUSIONS: OUR2D2 could be useful for individuals seeking to update literature review strategies across fields without rescreening articles from previous searches. Because the OUR2D2 source code is freely available with a permissive license, we recommend this application for researchers conducting literature reviews who need to update their search results over time, want a powerful and flexible analysis framework, and may not have access to paid subscription tools.
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spelling pubmed-82703832021-07-19 Updating search strategies for literature reviews with OUR2D2: an open-source computer application Lohr, Abby M. Van Gorden, Noah McClelland, D. Jean Dubinsky, Ellen Gerald, Lynn B. Wilkinson-Lee, Ada Carvajal, Scott C. J Med Libr Assoc Case Report BACKGROUND: While writing a scoping review, we needed to update our search strategy. We wanted to capture articles generated by our additional search terms and articles published since our original search. Simultaneously, we strove to optimize project resources by not rescreening articles that had been captured in our original results. CASE PRESENTATION: In response, we created Open Update Re-run Deduplicate (OUR2D2), a computer application that allows the user to compare search results from a variety of library databases. OUR2D2 supports extensible markup language (XML) files from EndNote and comma-separated values (CSV) files using article titles for comparisons. We conducted unit tests to ensure appropriate functionality as well as accurate data extraction and analysis. We tested OUR2D2 by comparing original and updated search results from PubMed, Embase, Clarivate Web of Science, CINAHL, Scopus, ProQuest Dissertation and Theses, and Lens and estimate that this application saved twenty-one hours of work during the screening process. CONCLUSIONS: OUR2D2 could be useful for individuals seeking to update literature review strategies across fields without rescreening articles from previous searches. Because the OUR2D2 source code is freely available with a permissive license, we recommend this application for researchers conducting literature reviews who need to update their search results over time, want a powerful and flexible analysis framework, and may not have access to paid subscription tools. University Library System, University of Pittsburgh 2021-04-01 2021-04-01 /pmc/articles/PMC8270383/ /pubmed/34285675 http://dx.doi.org/10.5195/jmla.2021.1105 Text en Copyright © 2021 Abby M Lohr, Noah Van Gorden, D Jean McClelland, Ellen Dubinsky, Lynn B Gerald, Ada Wilkinson-Lee, Scott C Carvajal https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Case Report
Lohr, Abby M.
Van Gorden, Noah
McClelland, D. Jean
Dubinsky, Ellen
Gerald, Lynn B.
Wilkinson-Lee, Ada
Carvajal, Scott C.
Updating search strategies for literature reviews with OUR2D2: an open-source computer application
title Updating search strategies for literature reviews with OUR2D2: an open-source computer application
title_full Updating search strategies for literature reviews with OUR2D2: an open-source computer application
title_fullStr Updating search strategies for literature reviews with OUR2D2: an open-source computer application
title_full_unstemmed Updating search strategies for literature reviews with OUR2D2: an open-source computer application
title_short Updating search strategies for literature reviews with OUR2D2: an open-source computer application
title_sort updating search strategies for literature reviews with our2d2: an open-source computer application
topic Case Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8270383/
https://www.ncbi.nlm.nih.gov/pubmed/34285675
http://dx.doi.org/10.5195/jmla.2021.1105
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