Cargando…

A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions

Deep learning algorithms trained on instances that violate the assumption of being independent and identically distributed (i.i.d.) are known to experience destructive interference, a phenomenon characterized by a degradation in performance. Such a violation, however, is ubiquitous in clinical setti...

Descripción completa

Detalles Bibliográficos
Autores principales: Kiyasseh, Dani, Zhu, Tingting, Clifton, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8270996/
https://www.ncbi.nlm.nih.gov/pubmed/34244504
http://dx.doi.org/10.1038/s41467-021-24483-0
_version_ 1783720914239619072
author Kiyasseh, Dani
Zhu, Tingting
Clifton, David
author_facet Kiyasseh, Dani
Zhu, Tingting
Clifton, David
author_sort Kiyasseh, Dani
collection PubMed
description Deep learning algorithms trained on instances that violate the assumption of being independent and identically distributed (i.i.d.) are known to experience destructive interference, a phenomenon characterized by a degradation in performance. Such a violation, however, is ubiquitous in clinical settings where data are streamed temporally from different clinical sites and from a multitude of physiological sensors. To mitigate this interference, we propose a continual learning strategy, entitled CLOPS, that employs a replay buffer. To guide the storage of instances into the buffer, we propose end-to-end trainable parameters, termed task-instance parameters, that quantify the difficulty with which data points are classified by a deep-learning system. We validate the interpretation of these parameters via clinical domain knowledge. To replay instances from the buffer, we exploit uncertainty-based acquisition functions. In three of the four continual learning scenarios, reflecting transitions across diseases, time, data modalities, and healthcare institutions, we show that CLOPS outperforms the state-of-the-art methods, GEM(1) and MIR(2). We also conduct extensive ablation studies to demonstrate the necessity of the various components of our proposed strategy. Our framework has the potential to pave the way for diagnostic systems that remain robust over time.
format Online
Article
Text
id pubmed-8270996
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-82709962021-07-23 A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions Kiyasseh, Dani Zhu, Tingting Clifton, David Nat Commun Article Deep learning algorithms trained on instances that violate the assumption of being independent and identically distributed (i.i.d.) are known to experience destructive interference, a phenomenon characterized by a degradation in performance. Such a violation, however, is ubiquitous in clinical settings where data are streamed temporally from different clinical sites and from a multitude of physiological sensors. To mitigate this interference, we propose a continual learning strategy, entitled CLOPS, that employs a replay buffer. To guide the storage of instances into the buffer, we propose end-to-end trainable parameters, termed task-instance parameters, that quantify the difficulty with which data points are classified by a deep-learning system. We validate the interpretation of these parameters via clinical domain knowledge. To replay instances from the buffer, we exploit uncertainty-based acquisition functions. In three of the four continual learning scenarios, reflecting transitions across diseases, time, data modalities, and healthcare institutions, we show that CLOPS outperforms the state-of-the-art methods, GEM(1) and MIR(2). We also conduct extensive ablation studies to demonstrate the necessity of the various components of our proposed strategy. Our framework has the potential to pave the way for diagnostic systems that remain robust over time. Nature Publishing Group UK 2021-07-09 /pmc/articles/PMC8270996/ /pubmed/34244504 http://dx.doi.org/10.1038/s41467-021-24483-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kiyasseh, Dani
Zhu, Tingting
Clifton, David
A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions
title A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions
title_full A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions
title_fullStr A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions
title_full_unstemmed A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions
title_short A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions
title_sort clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8270996/
https://www.ncbi.nlm.nih.gov/pubmed/34244504
http://dx.doi.org/10.1038/s41467-021-24483-0
work_keys_str_mv AT kiyassehdani aclinicaldeeplearningframeworkforcontinuallylearningfromcardiacsignalsacrossdiseasestimemodalitiesandinstitutions
AT zhutingting aclinicaldeeplearningframeworkforcontinuallylearningfromcardiacsignalsacrossdiseasestimemodalitiesandinstitutions
AT cliftondavid aclinicaldeeplearningframeworkforcontinuallylearningfromcardiacsignalsacrossdiseasestimemodalitiesandinstitutions
AT kiyassehdani clinicaldeeplearningframeworkforcontinuallylearningfromcardiacsignalsacrossdiseasestimemodalitiesandinstitutions
AT zhutingting clinicaldeeplearningframeworkforcontinuallylearningfromcardiacsignalsacrossdiseasestimemodalitiesandinstitutions
AT cliftondavid clinicaldeeplearningframeworkforcontinuallylearningfromcardiacsignalsacrossdiseasestimemodalitiesandinstitutions