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A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions
Deep learning algorithms trained on instances that violate the assumption of being independent and identically distributed (i.i.d.) are known to experience destructive interference, a phenomenon characterized by a degradation in performance. Such a violation, however, is ubiquitous in clinical setti...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8270996/ https://www.ncbi.nlm.nih.gov/pubmed/34244504 http://dx.doi.org/10.1038/s41467-021-24483-0 |
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author | Kiyasseh, Dani Zhu, Tingting Clifton, David |
author_facet | Kiyasseh, Dani Zhu, Tingting Clifton, David |
author_sort | Kiyasseh, Dani |
collection | PubMed |
description | Deep learning algorithms trained on instances that violate the assumption of being independent and identically distributed (i.i.d.) are known to experience destructive interference, a phenomenon characterized by a degradation in performance. Such a violation, however, is ubiquitous in clinical settings where data are streamed temporally from different clinical sites and from a multitude of physiological sensors. To mitigate this interference, we propose a continual learning strategy, entitled CLOPS, that employs a replay buffer. To guide the storage of instances into the buffer, we propose end-to-end trainable parameters, termed task-instance parameters, that quantify the difficulty with which data points are classified by a deep-learning system. We validate the interpretation of these parameters via clinical domain knowledge. To replay instances from the buffer, we exploit uncertainty-based acquisition functions. In three of the four continual learning scenarios, reflecting transitions across diseases, time, data modalities, and healthcare institutions, we show that CLOPS outperforms the state-of-the-art methods, GEM(1) and MIR(2). We also conduct extensive ablation studies to demonstrate the necessity of the various components of our proposed strategy. Our framework has the potential to pave the way for diagnostic systems that remain robust over time. |
format | Online Article Text |
id | pubmed-8270996 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82709962021-07-23 A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions Kiyasseh, Dani Zhu, Tingting Clifton, David Nat Commun Article Deep learning algorithms trained on instances that violate the assumption of being independent and identically distributed (i.i.d.) are known to experience destructive interference, a phenomenon characterized by a degradation in performance. Such a violation, however, is ubiquitous in clinical settings where data are streamed temporally from different clinical sites and from a multitude of physiological sensors. To mitigate this interference, we propose a continual learning strategy, entitled CLOPS, that employs a replay buffer. To guide the storage of instances into the buffer, we propose end-to-end trainable parameters, termed task-instance parameters, that quantify the difficulty with which data points are classified by a deep-learning system. We validate the interpretation of these parameters via clinical domain knowledge. To replay instances from the buffer, we exploit uncertainty-based acquisition functions. In three of the four continual learning scenarios, reflecting transitions across diseases, time, data modalities, and healthcare institutions, we show that CLOPS outperforms the state-of-the-art methods, GEM(1) and MIR(2). We also conduct extensive ablation studies to demonstrate the necessity of the various components of our proposed strategy. Our framework has the potential to pave the way for diagnostic systems that remain robust over time. Nature Publishing Group UK 2021-07-09 /pmc/articles/PMC8270996/ /pubmed/34244504 http://dx.doi.org/10.1038/s41467-021-24483-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Kiyasseh, Dani Zhu, Tingting Clifton, David A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions |
title | A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions |
title_full | A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions |
title_fullStr | A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions |
title_full_unstemmed | A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions |
title_short | A clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions |
title_sort | clinical deep learning framework for continually learning from cardiac signals across diseases, time, modalities, and institutions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8270996/ https://www.ncbi.nlm.nih.gov/pubmed/34244504 http://dx.doi.org/10.1038/s41467-021-24483-0 |
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